Hb_155946_030

Information

Type -
Description -
Location Contig155946: 3495-4370
Sequence    

Annotation

kegg
ID rcu:RCOM_1687090
description potassium channel tetramerization domain-containing protein, putative
nr
ID XP_012086873.1
description PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
swissprot
ID Q9FN67
description BTB/POZ domain-containing protein At5g41330 OS=Arabidopsis thaliana GN=At5g41330 PE=2 SV=1
trembl
ID A0A067JN47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20572 PE=4 SV=1
Gene Ontology
ID GO:0051260
description btb poz domain-containing protein at5g41330

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 001_L15.ab1: 3819-4603 , 040_B07.ab1: 3880-4602 , 043_I13.ab1: 3928-4603 , 046_L07.ab1: 3590-4439

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155946_030 0.0 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
2 Hb_001579_070 0.1133617724 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
3 Hb_000162_130 0.1192191266 - - conserved hypothetical protein [Ricinus communis]
4 Hb_124677_020 0.1238491757 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
5 Hb_000260_300 0.1319532715 - - calcium binding protein/cast, putative [Ricinus communis]
6 Hb_031108_010 0.1383467601 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
7 Hb_007894_020 0.1384806759 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
8 Hb_002007_070 0.1409827595 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
9 Hb_101058_020 0.1431709624 - - DWNN domain isoform 2 [Theobroma cacao]
10 Hb_004970_070 0.1462403545 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
11 Hb_005048_120 0.154756022 - - -
12 Hb_000336_060 0.1556895388 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
13 Hb_002151_130 0.1575291649 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
14 Hb_173271_010 0.1596459267 - - Disease resistance protein RPP13, putative [Ricinus communis]
15 Hb_000003_240 0.1608086045 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000984_290 0.1617748336 - - PREDICTED: putative lipase ROG1 isoform X2 [Jatropha curcas]
17 Hb_002048_100 0.1621647755 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Jatropha curcas]
18 Hb_158926_010 0.1668080935 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
19 Hb_002133_010 0.16782536 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
20 Hb_002400_020 0.1710069882 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]

Gene co-expression network

sample Hb_155946_030 Hb_155946_030 Hb_001579_070 Hb_001579_070 Hb_155946_030--Hb_001579_070 Hb_000162_130 Hb_000162_130 Hb_155946_030--Hb_000162_130 Hb_124677_020 Hb_124677_020 Hb_155946_030--Hb_124677_020 Hb_000260_300 Hb_000260_300 Hb_155946_030--Hb_000260_300 Hb_031108_010 Hb_031108_010 Hb_155946_030--Hb_031108_010 Hb_007894_020 Hb_007894_020 Hb_155946_030--Hb_007894_020 Hb_011930_120 Hb_011930_120 Hb_001579_070--Hb_011930_120 Hb_000003_240 Hb_000003_240 Hb_001579_070--Hb_000003_240 Hb_001519_060 Hb_001519_060 Hb_001579_070--Hb_001519_060 Hb_000680_180 Hb_000680_180 Hb_001579_070--Hb_000680_180 Hb_001579_070--Hb_031108_010 Hb_002007_070 Hb_002007_070 Hb_000162_130--Hb_002007_070 Hb_000162_130--Hb_001579_070 Hb_000959_020 Hb_000959_020 Hb_000162_130--Hb_000959_020 Hb_000162_130--Hb_000680_180 Hb_000162_130--Hb_000003_240 Hb_000336_060 Hb_000336_060 Hb_124677_020--Hb_000336_060 Hb_124677_020--Hb_000260_300 Hb_002151_130 Hb_002151_130 Hb_124677_020--Hb_002151_130 Hb_022137_020 Hb_022137_020 Hb_124677_020--Hb_022137_020 Hb_001999_170 Hb_001999_170 Hb_124677_020--Hb_001999_170 Hb_006043_020 Hb_006043_020 Hb_000260_300--Hb_006043_020 Hb_005976_040 Hb_005976_040 Hb_000260_300--Hb_005976_040 Hb_018563_020 Hb_018563_020 Hb_000260_300--Hb_018563_020 Hb_000260_300--Hb_000336_060 Hb_009476_110 Hb_009476_110 Hb_031108_010--Hb_009476_110 Hb_000776_050 Hb_000776_050 Hb_031108_010--Hb_000776_050 Hb_031108_010--Hb_124677_020 Hb_000086_620 Hb_000086_620 Hb_031108_010--Hb_000086_620 Hb_101058_020 Hb_101058_020 Hb_007894_020--Hb_101058_020 Hb_007894_020--Hb_022137_020 Hb_158926_010 Hb_158926_010 Hb_007894_020--Hb_158926_010 Hb_002542_030 Hb_002542_030 Hb_007894_020--Hb_002542_030 Hb_007894_020--Hb_124677_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32027 50.1988 52.1607 31.5269 0.58362 0.412242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.3185 6.07971 2.74938 3.06232 2.86233

CAGE analysis