Hb_001519_060

Information

Type -
Description -
Location Contig1519: 32451-35526
Sequence    

Annotation

kegg
ID rcu:RCOM_0816990
description Glutamyl-tRNA reductase 1, chloroplast precursor, putative (EC:1.2.1.70)
nr
ID XP_012074563.1
description PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
swissprot
ID P93111
description Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumis sativus GN=HEMA1 PE=2 SV=1
trembl
ID A0A067KUH9
description Glutamyl-tRNA reductase OS=Jatropha curcas GN=JCGZ_09907 PE=3 SV=1
Gene Ontology
ID GO:0008883
description glutamyl-trna reductase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12935: 32179-35569
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001519_060 0.0 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
2 Hb_007224_010 0.1090730303 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
3 Hb_001627_010 0.1093788896 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
4 Hb_002965_080 0.1135767 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
5 Hb_001396_120 0.1138240455 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
6 Hb_001579_070 0.1153388255 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
7 Hb_002217_190 0.1158708327 - - invertase [Hevea brasiliensis]
8 Hb_011930_120 0.1200312905 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
9 Hb_000959_020 0.1306206554 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_161901_020 0.1328004295 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
11 Hb_000336_180 0.1344835935 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001294_050 0.1346935027 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
13 Hb_000622_210 0.1386696209 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
14 Hb_021409_110 0.1398737971 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_000009_200 0.1410451088 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
16 Hb_002014_050 0.1419518899 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
17 Hb_001246_160 0.1432616075 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
18 Hb_012787_030 0.1435187268 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
19 Hb_015026_040 0.1474255641 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
20 Hb_000003_240 0.1475237435 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001519_060 Hb_001519_060 Hb_007224_010 Hb_007224_010 Hb_001519_060--Hb_007224_010 Hb_001627_010 Hb_001627_010 Hb_001519_060--Hb_001627_010 Hb_002965_080 Hb_002965_080 Hb_001519_060--Hb_002965_080 Hb_001396_120 Hb_001396_120 Hb_001519_060--Hb_001396_120 Hb_001579_070 Hb_001579_070 Hb_001519_060--Hb_001579_070 Hb_002217_190 Hb_002217_190 Hb_001519_060--Hb_002217_190 Hb_007224_010--Hb_001627_010 Hb_021409_110 Hb_021409_110 Hb_007224_010--Hb_021409_110 Hb_132840_020 Hb_132840_020 Hb_007224_010--Hb_132840_020 Hb_000086_640 Hb_000086_640 Hb_007224_010--Hb_000086_640 Hb_000928_250 Hb_000928_250 Hb_007224_010--Hb_000928_250 Hb_002014_050 Hb_002014_050 Hb_001627_010--Hb_002014_050 Hb_001627_010--Hb_132840_020 Hb_001294_050 Hb_001294_050 Hb_001627_010--Hb_001294_050 Hb_000111_390 Hb_000111_390 Hb_001627_010--Hb_000111_390 Hb_002249_170 Hb_002249_170 Hb_002965_080--Hb_002249_170 Hb_011671_110 Hb_011671_110 Hb_002965_080--Hb_011671_110 Hb_002965_080--Hb_001396_120 Hb_002965_080--Hb_007224_010 Hb_000336_180 Hb_000336_180 Hb_002965_080--Hb_000336_180 Hb_001396_120--Hb_000336_180 Hb_001396_120--Hb_002014_050 Hb_000009_200 Hb_000009_200 Hb_001396_120--Hb_000009_200 Hb_005725_280 Hb_005725_280 Hb_001396_120--Hb_005725_280 Hb_011930_120 Hb_011930_120 Hb_001579_070--Hb_011930_120 Hb_000003_240 Hb_000003_240 Hb_001579_070--Hb_000003_240 Hb_155946_030 Hb_155946_030 Hb_001579_070--Hb_155946_030 Hb_000680_180 Hb_000680_180 Hb_001579_070--Hb_000680_180 Hb_031108_010 Hb_031108_010 Hb_001579_070--Hb_031108_010 Hb_008173_060 Hb_008173_060 Hb_002217_190--Hb_008173_060 Hb_000818_120 Hb_000818_120 Hb_002217_190--Hb_000818_120 Hb_002217_190--Hb_001627_010 Hb_176472_020 Hb_176472_020 Hb_002217_190--Hb_176472_020 Hb_001198_080 Hb_001198_080 Hb_002217_190--Hb_001198_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.62998 43.4933 54.7268 30.9124 2.72284 2.93189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.22685 6.76492 2.7967 3.44867 13.5447

CAGE analysis