Hb_008173_060

Information

Type -
Description -
Location Contig8173: 36446-39469
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09250g
description POPTRDRAFT_180397; hypothetical protein
nr
ID XP_012086923.1
description PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID A0A067K0X0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20605 PE=4 SV=1
Gene Ontology
ID GO:0016021
description multiple c2 and transmembrane domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59462: 37610-37778
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008173_060 0.0 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
2 Hb_002217_190 0.1239786554 - - invertase [Hevea brasiliensis]
3 Hb_000134_030 0.1288140082 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
4 Hb_004452_090 0.1425869018 - - hypothetical protein JCGZ_12231 [Jatropha curcas]
5 Hb_176472_020 0.1505416364 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007545_110 0.1566662597 - - catalytic, putative [Ricinus communis]
7 Hb_012545_030 0.1566721273 - - Polyadenylate-binding protein RBP47C [Glycine soja]
8 Hb_003549_130 0.1579798873 - - neutral/alkaline invertase [Manihot esculenta]
9 Hb_002540_070 0.15909068 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
10 Hb_001214_190 0.159871514 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
11 Hb_000563_440 0.1608518692 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
12 Hb_001318_150 0.16454255 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
13 Hb_027445_040 0.1646314581 - - PREDICTED: uncharacterized protein LOC105117996 [Populus euphratica]
14 Hb_143813_020 0.1664419747 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
15 Hb_005701_110 0.1691790491 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
16 Hb_124951_010 0.1698699988 - - chitinase-like protein [Hevea brasiliensis]
17 Hb_000069_240 0.1725272239 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3-like [Jatropha curcas]
18 Hb_007123_080 0.1731738035 - - big map kinase/bmk, putative [Ricinus communis]
19 Hb_000684_100 0.1749520129 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
20 Hb_002304_010 0.1752505918 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_008173_060 Hb_008173_060 Hb_002217_190 Hb_002217_190 Hb_008173_060--Hb_002217_190 Hb_000134_030 Hb_000134_030 Hb_008173_060--Hb_000134_030 Hb_004452_090 Hb_004452_090 Hb_008173_060--Hb_004452_090 Hb_176472_020 Hb_176472_020 Hb_008173_060--Hb_176472_020 Hb_007545_110 Hb_007545_110 Hb_008173_060--Hb_007545_110 Hb_012545_030 Hb_012545_030 Hb_008173_060--Hb_012545_030 Hb_001519_060 Hb_001519_060 Hb_002217_190--Hb_001519_060 Hb_000818_120 Hb_000818_120 Hb_002217_190--Hb_000818_120 Hb_001627_010 Hb_001627_010 Hb_002217_190--Hb_001627_010 Hb_002217_190--Hb_176472_020 Hb_001198_080 Hb_001198_080 Hb_002217_190--Hb_001198_080 Hb_002400_050 Hb_002400_050 Hb_000134_030--Hb_002400_050 Hb_124951_010 Hb_124951_010 Hb_000134_030--Hb_124951_010 Hb_002518_200 Hb_002518_200 Hb_000134_030--Hb_002518_200 Hb_000260_610 Hb_000260_610 Hb_000134_030--Hb_000260_610 Hb_000890_020 Hb_000890_020 Hb_000134_030--Hb_000890_020 Hb_005701_110 Hb_005701_110 Hb_004452_090--Hb_005701_110 Hb_000236_480 Hb_000236_480 Hb_004452_090--Hb_000236_480 Hb_001155_050 Hb_001155_050 Hb_004452_090--Hb_001155_050 Hb_004452_090--Hb_002217_190 Hb_001040_060 Hb_001040_060 Hb_004452_090--Hb_001040_060 Hb_002218_100 Hb_002218_100 Hb_176472_020--Hb_002218_100 Hb_176472_020--Hb_007545_110 Hb_004449_140 Hb_004449_140 Hb_176472_020--Hb_004449_140 Hb_006775_070 Hb_006775_070 Hb_176472_020--Hb_006775_070 Hb_038044_010 Hb_038044_010 Hb_007545_110--Hb_038044_010 Hb_022092_040 Hb_022092_040 Hb_007545_110--Hb_022092_040 Hb_007545_110--Hb_000260_610 Hb_024973_020 Hb_024973_020 Hb_007545_110--Hb_024973_020 Hb_000032_200 Hb_000032_200 Hb_007545_110--Hb_000032_200 Hb_000421_230 Hb_000421_230 Hb_012545_030--Hb_000421_230 Hb_012545_030--Hb_005701_110 Hb_006120_150 Hb_006120_150 Hb_012545_030--Hb_006120_150 Hb_001511_030 Hb_001511_030 Hb_012545_030--Hb_001511_030 Hb_001318_150 Hb_001318_150 Hb_012545_030--Hb_001318_150 Hb_003147_070 Hb_003147_070 Hb_012545_030--Hb_003147_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116939 0.547728 1.51337 0.377901 0.036054 0.061662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0575735 0.215204 0.108347 0.220118 0.096678

CAGE analysis