Hb_000260_610

Information

Type -
Description -
Location Contig260: 449350-451472
Sequence    

Annotation

kegg
ID rcu:RCOM_1324350
description cell division cycle, putative
nr
ID XP_012090941.1
description PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
swissprot
ID Q9SZA4
description Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana GN=CDC20-1 PE=1 SV=1
trembl
ID A0A067JP69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00582 PE=4 SV=1
Gene Ontology
ID GO:0051301
description cell division cycle cofactor of apc complex-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27036: 449298-451792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_610 0.0 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
2 Hb_013344_010 0.1215195101 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
3 Hb_006060_010 0.1236973623 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
4 Hb_007545_110 0.1273478104 - - catalytic, putative [Ricinus communis]
5 Hb_002400_050 0.1394739694 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
6 Hb_003667_020 0.1401069967 - - conserved hypothetical protein 16 [Hevea brasiliensis]
7 Hb_004920_050 0.140685274 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
8 Hb_002518_200 0.1424328743 - - Proliferating cell nuclear antigen [Theobroma cacao]
9 Hb_008250_020 0.1430758041 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
10 Hb_006153_010 0.1432975215 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
11 Hb_000960_120 0.1447475558 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
12 Hb_000134_030 0.1468232147 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
13 Hb_002078_230 0.1477500378 - - PREDICTED: HORMA domain-containing protein 1 [Jatropha curcas]
14 Hb_022092_040 0.1479787759 - - PREDICTED: serine/arginine repetitive matrix protein 1 [Jatropha curcas]
15 Hb_000890_020 0.1504145896 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
16 Hb_000181_270 0.1517647167 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000288_090 0.1530135162 - - unnamed protein product [Vitis vinifera]
18 Hb_006775_070 0.1541320898 - - zinc finger protein, putative [Ricinus communis]
19 Hb_001541_190 0.1603426706 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
20 Hb_003119_040 0.1705473938 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]

Gene co-expression network

sample Hb_000260_610 Hb_000260_610 Hb_013344_010 Hb_013344_010 Hb_000260_610--Hb_013344_010 Hb_006060_010 Hb_006060_010 Hb_000260_610--Hb_006060_010 Hb_007545_110 Hb_007545_110 Hb_000260_610--Hb_007545_110 Hb_002400_050 Hb_002400_050 Hb_000260_610--Hb_002400_050 Hb_003667_020 Hb_003667_020 Hb_000260_610--Hb_003667_020 Hb_004920_050 Hb_004920_050 Hb_000260_610--Hb_004920_050 Hb_000960_120 Hb_000960_120 Hb_013344_010--Hb_000960_120 Hb_013344_010--Hb_006060_010 Hb_001329_010 Hb_001329_010 Hb_013344_010--Hb_001329_010 Hb_000656_320 Hb_000656_320 Hb_013344_010--Hb_000656_320 Hb_008406_100 Hb_008406_100 Hb_013344_010--Hb_008406_100 Hb_012753_150 Hb_012753_150 Hb_006060_010--Hb_012753_150 Hb_003878_060 Hb_003878_060 Hb_006060_010--Hb_003878_060 Hb_006060_010--Hb_000960_120 Hb_003119_040 Hb_003119_040 Hb_006060_010--Hb_003119_040 Hb_038044_010 Hb_038044_010 Hb_007545_110--Hb_038044_010 Hb_022092_040 Hb_022092_040 Hb_007545_110--Hb_022092_040 Hb_024973_020 Hb_024973_020 Hb_007545_110--Hb_024973_020 Hb_000032_200 Hb_000032_200 Hb_007545_110--Hb_000032_200 Hb_176472_020 Hb_176472_020 Hb_007545_110--Hb_176472_020 Hb_000890_020 Hb_000890_020 Hb_002400_050--Hb_000890_020 Hb_000134_030 Hb_000134_030 Hb_002400_050--Hb_000134_030 Hb_002400_050--Hb_007545_110 Hb_002518_200 Hb_002518_200 Hb_002400_050--Hb_002518_200 Hb_000181_270 Hb_000181_270 Hb_002400_050--Hb_000181_270 Hb_001862_030 Hb_001862_030 Hb_003667_020--Hb_001862_030 Hb_001541_190 Hb_001541_190 Hb_003667_020--Hb_001541_190 Hb_001862_050 Hb_001862_050 Hb_003667_020--Hb_001862_050 Hb_000165_090 Hb_000165_090 Hb_003667_020--Hb_000165_090 Hb_000069_300 Hb_000069_300 Hb_003667_020--Hb_000069_300 Hb_004920_050--Hb_000181_270 Hb_011485_030 Hb_011485_030 Hb_004920_050--Hb_011485_030 Hb_000077_110 Hb_000077_110 Hb_004920_050--Hb_000077_110 Hb_004920_050--Hb_000890_020 Hb_004920_050--Hb_002518_200 Hb_000566_130 Hb_000566_130 Hb_004920_050--Hb_000566_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.59636 7.80244 31.5453 13.4699 1.84677 1.18731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.717717 0.662847 0.738007 3.51793 1.33539

CAGE analysis