Hb_001329_010

Information

Type -
Description -
Location Contig1329: 8974-10479
Sequence    

Annotation

kegg
ID rcu:RCOM_1345480
description zinc finger protein, putative
nr
ID XP_002515225.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID O80522
description GDSL esterase/lipase At1g09390 OS=Arabidopsis thaliana GN=At1g09390 PE=2 SV=1
trembl
ID B9RN86
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1345480 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at1g09390-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09376: 8998-9526 , PASA_asmbl_09377: 9898-10509
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_010 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000656_320 0.1205554718 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
3 Hb_013344_010 0.1424002882 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
4 Hb_000556_130 0.143556189 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
5 Hb_003813_110 0.1569232306 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002942_170 0.1598497655 - - acyl carrier protein, putative [Ricinus communis]
7 Hb_072201_010 0.1599103256 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
8 Hb_000441_210 0.1619148482 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
9 Hb_000936_030 0.1670645974 - - hypothetical protein RCOM_0615680 [Ricinus communis]
10 Hb_004619_090 0.1679205533 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002205_180 0.1870448945 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
12 Hb_004102_090 0.1871572198 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
13 Hb_012150_040 0.1890786447 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000069_650 0.1895559982 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000960_120 0.1916199875 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
16 Hb_002311_090 0.1950017031 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
17 Hb_014497_070 0.1951502052 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
18 Hb_001366_280 0.1951561536 - - PREDICTED: uncharacterized protein LOC105642732 [Jatropha curcas]
19 Hb_000567_290 0.1963571664 - - hypothetical protein RCOM_0303940 [Ricinus communis]
20 Hb_001168_030 0.1968435602 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]

Gene co-expression network

sample Hb_001329_010 Hb_001329_010 Hb_000656_320 Hb_000656_320 Hb_001329_010--Hb_000656_320 Hb_013344_010 Hb_013344_010 Hb_001329_010--Hb_013344_010 Hb_000556_130 Hb_000556_130 Hb_001329_010--Hb_000556_130 Hb_003813_110 Hb_003813_110 Hb_001329_010--Hb_003813_110 Hb_002942_170 Hb_002942_170 Hb_001329_010--Hb_002942_170 Hb_072201_010 Hb_072201_010 Hb_001329_010--Hb_072201_010 Hb_006060_010 Hb_006060_010 Hb_000656_320--Hb_006060_010 Hb_000936_030 Hb_000936_030 Hb_000656_320--Hb_000936_030 Hb_000656_320--Hb_013344_010 Hb_000577_050 Hb_000577_050 Hb_000656_320--Hb_000577_050 Hb_014497_070 Hb_014497_070 Hb_000656_320--Hb_014497_070 Hb_000960_120 Hb_000960_120 Hb_013344_010--Hb_000960_120 Hb_000260_610 Hb_000260_610 Hb_013344_010--Hb_000260_610 Hb_013344_010--Hb_006060_010 Hb_008406_100 Hb_008406_100 Hb_013344_010--Hb_008406_100 Hb_007617_040 Hb_007617_040 Hb_000556_130--Hb_007617_040 Hb_004619_090 Hb_004619_090 Hb_000556_130--Hb_004619_090 Hb_000556_130--Hb_003813_110 Hb_000663_070 Hb_000663_070 Hb_000556_130--Hb_000663_070 Hb_000556_130--Hb_000656_320 Hb_000567_290 Hb_000567_290 Hb_003813_110--Hb_000567_290 Hb_000661_150 Hb_000661_150 Hb_003813_110--Hb_000661_150 Hb_003813_110--Hb_004619_090 Hb_000441_210 Hb_000441_210 Hb_003813_110--Hb_000441_210 Hb_002311_090 Hb_002311_090 Hb_003813_110--Hb_002311_090 Hb_000418_040 Hb_000418_040 Hb_003813_110--Hb_000418_040 Hb_002811_220 Hb_002811_220 Hb_002942_170--Hb_002811_220 Hb_022425_020 Hb_022425_020 Hb_002942_170--Hb_022425_020 Hb_173638_010 Hb_173638_010 Hb_002942_170--Hb_173638_010 Hb_007904_050 Hb_007904_050 Hb_002942_170--Hb_007904_050 Hb_001366_280 Hb_001366_280 Hb_002942_170--Hb_001366_280 Hb_000069_650 Hb_000069_650 Hb_072201_010--Hb_000069_650 Hb_012150_040 Hb_012150_040 Hb_072201_010--Hb_012150_040 Hb_003847_060 Hb_003847_060 Hb_072201_010--Hb_003847_060 Hb_001950_090 Hb_001950_090 Hb_072201_010--Hb_001950_090 Hb_021576_050 Hb_021576_050 Hb_072201_010--Hb_021576_050 Hb_000317_120 Hb_000317_120 Hb_072201_010--Hb_000317_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.195692 0.438347 9.72084 5.7548 0.232404 0.699655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.229642 0.252876 0 0.406031 0.0743045

CAGE analysis