Hb_002811_220

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig2811: 187715-189880
Sequence    

Annotation

kegg
ID rcu:RCOM_1427810
description transcription factor, putative
nr
ID XP_002512226.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8H181
description Trihelix transcription factor GTL2 OS=Arabidopsis thaliana GN=At5g28300 PE=2 SV=1
trembl
ID B9REQ7
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1427810 PE=4 SV=1
Gene Ontology
ID GO:0005488
description trihelix transcription factor gtl2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_220 0.0 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
2 Hb_002942_170 0.1693644067 - - acyl carrier protein, putative [Ricinus communis]
3 Hb_000002_430 0.1808895998 - - PREDICTED: FHA domain-containing protein At4g14490 [Populus euphratica]
4 Hb_000416_080 0.1881320277 - - Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, putative [Ricinus communis]
5 Hb_003750_090 0.1910031185 - - BnaC02g34020D [Brassica napus]
6 Hb_000120_630 0.1950912842 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
7 Hb_059567_010 0.1989396584 - - PREDICTED: transcription factor PAR2-like [Jatropha curcas]
8 Hb_011501_010 0.2002123734 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like [Jatropha curcas]
9 Hb_004079_090 0.2033063822 - - hypothetical protein RCOM_1053120 [Ricinus communis]
10 Hb_001510_040 0.207663443 - - PREDICTED: 125 kDa kinesin-related protein [Jatropha curcas]
11 Hb_002851_040 0.2108390702 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
12 Hb_000120_930 0.2132578955 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
13 Hb_004254_060 0.2161559999 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
14 Hb_000958_160 0.2195239506 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like isoform X1 [Jatropha curcas]
15 Hb_000020_040 0.2206555801 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
16 Hb_000291_070 0.2221749297 - - conserved hypothetical protein [Ricinus communis]
17 Hb_016898_020 0.228870352 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
18 Hb_173638_010 0.2288793041 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
19 Hb_000069_510 0.2294164692 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
20 Hb_000671_020 0.2302846092 - - PREDICTED: RNA-binding protein 38 [Jatropha curcas]

Gene co-expression network

sample Hb_002811_220 Hb_002811_220 Hb_002942_170 Hb_002942_170 Hb_002811_220--Hb_002942_170 Hb_000002_430 Hb_000002_430 Hb_002811_220--Hb_000002_430 Hb_000416_080 Hb_000416_080 Hb_002811_220--Hb_000416_080 Hb_003750_090 Hb_003750_090 Hb_002811_220--Hb_003750_090 Hb_000120_630 Hb_000120_630 Hb_002811_220--Hb_000120_630 Hb_059567_010 Hb_059567_010 Hb_002811_220--Hb_059567_010 Hb_001329_010 Hb_001329_010 Hb_002942_170--Hb_001329_010 Hb_022425_020 Hb_022425_020 Hb_002942_170--Hb_022425_020 Hb_173638_010 Hb_173638_010 Hb_002942_170--Hb_173638_010 Hb_007904_050 Hb_007904_050 Hb_002942_170--Hb_007904_050 Hb_001366_280 Hb_001366_280 Hb_002942_170--Hb_001366_280 Hb_000002_430--Hb_000416_080 Hb_001864_040 Hb_001864_040 Hb_000002_430--Hb_001864_040 Hb_000265_100 Hb_000265_100 Hb_000002_430--Hb_000265_100 Hb_004635_020 Hb_004635_020 Hb_000002_430--Hb_004635_020 Hb_003935_090 Hb_003935_090 Hb_000002_430--Hb_003935_090 Hb_033152_060 Hb_033152_060 Hb_000002_430--Hb_033152_060 Hb_001969_120 Hb_001969_120 Hb_000416_080--Hb_001969_120 Hb_000340_550 Hb_000340_550 Hb_000416_080--Hb_000340_550 Hb_003776_050 Hb_003776_050 Hb_000416_080--Hb_003776_050 Hb_005618_070 Hb_005618_070 Hb_000416_080--Hb_005618_070 Hb_011849_010 Hb_011849_010 Hb_000416_080--Hb_011849_010 Hb_000187_050 Hb_000187_050 Hb_003750_090--Hb_000187_050 Hb_000445_260 Hb_000445_260 Hb_003750_090--Hb_000445_260 Hb_011861_130 Hb_011861_130 Hb_003750_090--Hb_011861_130 Hb_002686_320 Hb_002686_320 Hb_003750_090--Hb_002686_320 Hb_001971_040 Hb_001971_040 Hb_003750_090--Hb_001971_040 Hb_009113_020 Hb_009113_020 Hb_003750_090--Hb_009113_020 Hb_004254_060 Hb_004254_060 Hb_000120_630--Hb_004254_060 Hb_145745_040 Hb_145745_040 Hb_000120_630--Hb_145745_040 Hb_001140_190 Hb_001140_190 Hb_000120_630--Hb_001140_190 Hb_000958_160 Hb_000958_160 Hb_000120_630--Hb_000958_160 Hb_000352_010 Hb_000352_010 Hb_000120_630--Hb_000352_010 Hb_001266_150 Hb_001266_150 Hb_059567_010--Hb_001266_150 Hb_000925_150 Hb_000925_150 Hb_059567_010--Hb_000925_150 Hb_059567_010--Hb_001140_190 Hb_011457_120 Hb_011457_120 Hb_059567_010--Hb_011457_120 Hb_000932_110 Hb_000932_110 Hb_059567_010--Hb_000932_110 Hb_059567_010--Hb_000958_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.016115 0 0.388847 0.239669 0 0.0613992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0185346 0.048699

CAGE analysis