Hb_004254_060

Information

Type -
Description -
Location Contig4254: 43014-45533
Sequence    

Annotation

kegg
ID rcu:RCOM_1158810
description hypothetical protein
nr
ID XP_012093008.1
description PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9T1N2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1158810 PE=4 SV=1
Gene Ontology
ID GO:0005840
description checkpoint serine threonine-protein kinase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004254_060 0.0 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
2 Hb_000120_930 0.1426501531 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
3 Hb_011501_010 0.1482064245 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like [Jatropha curcas]
4 Hb_016333_010 0.1569084695 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
5 Hb_000497_250 0.1587437679 - - PREDICTED: potassium transporter 5 [Jatropha curcas]
6 Hb_001431_090 0.1590625305 transcription factor TF Family: DBP PREDICTED: probable protein phosphatase 2C 47, partial [Camelina sativa]
7 Hb_000676_360 0.1598031297 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
8 Hb_000320_010 0.1606894343 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007632_070 0.1608636107 - - kinase, putative [Ricinus communis]
10 Hb_001863_330 0.163764237 - - RNA-binding region-containing protein, putative [Ricinus communis]
11 Hb_000270_100 0.1652383705 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
12 Hb_125573_010 0.165510876 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_000005_240 0.1694143301 - - Shugoshin-1, putative [Ricinus communis]
14 Hb_000563_470 0.16980055 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
15 Hb_000321_110 0.1717233418 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
16 Hb_007617_010 0.1734937302 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
17 Hb_010407_130 0.1735537637 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
18 Hb_000120_630 0.1756936405 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
19 Hb_004435_020 0.1759533037 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
20 Hb_012653_050 0.1763234015 - - hypothetical protein RCOM_0460020 [Ricinus communis]

Gene co-expression network

sample Hb_004254_060 Hb_004254_060 Hb_000120_930 Hb_000120_930 Hb_004254_060--Hb_000120_930 Hb_011501_010 Hb_011501_010 Hb_004254_060--Hb_011501_010 Hb_016333_010 Hb_016333_010 Hb_004254_060--Hb_016333_010 Hb_000497_250 Hb_000497_250 Hb_004254_060--Hb_000497_250 Hb_001431_090 Hb_001431_090 Hb_004254_060--Hb_001431_090 Hb_000676_360 Hb_000676_360 Hb_004254_060--Hb_000676_360 Hb_002267_060 Hb_002267_060 Hb_000120_930--Hb_002267_060 Hb_000321_170 Hb_000321_170 Hb_000120_930--Hb_000321_170 Hb_003750_090 Hb_003750_090 Hb_000120_930--Hb_003750_090 Hb_002045_210 Hb_002045_210 Hb_000120_930--Hb_002045_210 Hb_000120_930--Hb_001431_090 Hb_000187_050 Hb_000187_050 Hb_011501_010--Hb_000187_050 Hb_000563_470 Hb_000563_470 Hb_011501_010--Hb_000563_470 Hb_009113_020 Hb_009113_020 Hb_011501_010--Hb_009113_020 Hb_011501_010--Hb_003750_090 Hb_001863_330 Hb_001863_330 Hb_011501_010--Hb_001863_330 Hb_002686_320 Hb_002686_320 Hb_011501_010--Hb_002686_320 Hb_016333_010--Hb_001863_330 Hb_127839_010 Hb_127839_010 Hb_016333_010--Hb_127839_010 Hb_007632_070 Hb_007632_070 Hb_016333_010--Hb_007632_070 Hb_087992_010 Hb_087992_010 Hb_016333_010--Hb_087992_010 Hb_001958_010 Hb_001958_010 Hb_016333_010--Hb_001958_010 Hb_004037_040 Hb_004037_040 Hb_016333_010--Hb_004037_040 Hb_000497_250--Hb_001431_090 Hb_007617_010 Hb_007617_010 Hb_000497_250--Hb_007617_010 Hb_004143_090 Hb_004143_090 Hb_000497_250--Hb_004143_090 Hb_001514_030 Hb_001514_030 Hb_000497_250--Hb_001514_030 Hb_019516_010 Hb_019516_010 Hb_000497_250--Hb_019516_010 Hb_007922_030 Hb_007922_030 Hb_000497_250--Hb_007922_030 Hb_001431_090--Hb_001514_030 Hb_003894_170 Hb_003894_170 Hb_001431_090--Hb_003894_170 Hb_001431_090--Hb_016333_010 Hb_168918_010 Hb_168918_010 Hb_001431_090--Hb_168918_010 Hb_004313_010 Hb_004313_010 Hb_000676_360--Hb_004313_010 Hb_009847_010 Hb_009847_010 Hb_000676_360--Hb_009847_010 Hb_000847_090 Hb_000847_090 Hb_000676_360--Hb_000847_090 Hb_000375_220 Hb_000375_220 Hb_000676_360--Hb_000375_220 Hb_186458_010 Hb_186458_010 Hb_000676_360--Hb_186458_010 Hb_000556_060 Hb_000556_060 Hb_000676_360--Hb_000556_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0113719 0 0.327446 0.396425 0 0.029879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.016215 0.171388

CAGE analysis