Hb_000120_930

Information

Type -
Description -
Location Contig120: 715205-718415
Sequence    

Annotation

kegg
ID rcu:RCOM_0873690
description cyclin B, putative
nr
ID XP_012065375.1
description PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
swissprot
ID P46277
description G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia PE=2 SV=1
trembl
ID A0A067L5M8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22378 PE=3 SV=1
Gene Ontology
ID GO:0005634
description g2 mitotic-specific cyclin-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06231: 715467-718471 , PASA_asmbl_06232: 716719-717050
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_930 0.0 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
2 Hb_002267_060 0.1113560232 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
3 Hb_000321_170 0.111857013 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
4 Hb_004254_060 0.1426501531 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
5 Hb_003750_090 0.1436518775 - - BnaC02g34020D [Brassica napus]
6 Hb_002045_210 0.1444851904 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
7 Hb_001431_090 0.1466123388 transcription factor TF Family: DBP PREDICTED: probable protein phosphatase 2C 47, partial [Camelina sativa]
8 Hb_005890_020 0.1514986185 - - putative plant disease resistance family protein [Populus trichocarpa]
9 Hb_168918_010 0.1533353121 - - pectin acetylesterase, putative [Ricinus communis]
10 Hb_001186_100 0.1583963352 - - PREDICTED: uncharacterized protein LOC105640806 isoform X1 [Jatropha curcas]
11 Hb_000497_250 0.1585606712 - - PREDICTED: potassium transporter 5 [Jatropha curcas]
12 Hb_005496_040 0.1590520069 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
13 Hb_000479_020 0.1612031496 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000925_150 0.1640812418 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
15 Hb_000260_380 0.1643001047 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
16 Hb_011501_010 0.1647275431 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like [Jatropha curcas]
17 Hb_000270_100 0.1662811041 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
18 Hb_000107_360 0.166414731 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
19 Hb_028487_060 0.168346861 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
20 Hb_001514_030 0.1685092859 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000120_930 Hb_000120_930 Hb_002267_060 Hb_002267_060 Hb_000120_930--Hb_002267_060 Hb_000321_170 Hb_000321_170 Hb_000120_930--Hb_000321_170 Hb_004254_060 Hb_004254_060 Hb_000120_930--Hb_004254_060 Hb_003750_090 Hb_003750_090 Hb_000120_930--Hb_003750_090 Hb_002045_210 Hb_002045_210 Hb_000120_930--Hb_002045_210 Hb_001431_090 Hb_001431_090 Hb_000120_930--Hb_001431_090 Hb_002267_060--Hb_000321_170 Hb_002267_060--Hb_002045_210 Hb_028487_060 Hb_028487_060 Hb_002267_060--Hb_028487_060 Hb_003086_160 Hb_003086_160 Hb_002267_060--Hb_003086_160 Hb_000022_080 Hb_000022_080 Hb_002267_060--Hb_000022_080 Hb_000321_170--Hb_002045_210 Hb_005496_040 Hb_005496_040 Hb_000321_170--Hb_005496_040 Hb_000321_170--Hb_000022_080 Hb_005890_020 Hb_005890_020 Hb_000321_170--Hb_005890_020 Hb_011501_010 Hb_011501_010 Hb_004254_060--Hb_011501_010 Hb_016333_010 Hb_016333_010 Hb_004254_060--Hb_016333_010 Hb_000497_250 Hb_000497_250 Hb_004254_060--Hb_000497_250 Hb_004254_060--Hb_001431_090 Hb_000676_360 Hb_000676_360 Hb_004254_060--Hb_000676_360 Hb_000187_050 Hb_000187_050 Hb_003750_090--Hb_000187_050 Hb_000445_260 Hb_000445_260 Hb_003750_090--Hb_000445_260 Hb_011861_130 Hb_011861_130 Hb_003750_090--Hb_011861_130 Hb_002686_320 Hb_002686_320 Hb_003750_090--Hb_002686_320 Hb_001971_040 Hb_001971_040 Hb_003750_090--Hb_001971_040 Hb_009113_020 Hb_009113_020 Hb_003750_090--Hb_009113_020 Hb_001056_040 Hb_001056_040 Hb_002045_210--Hb_001056_040 Hb_002045_210--Hb_005496_040 Hb_000342_040 Hb_000342_040 Hb_002045_210--Hb_000342_040 Hb_003750_120 Hb_003750_120 Hb_002045_210--Hb_003750_120 Hb_002045_210--Hb_000022_080 Hb_001431_090--Hb_000497_250 Hb_001514_030 Hb_001514_030 Hb_001431_090--Hb_001514_030 Hb_003894_170 Hb_003894_170 Hb_001431_090--Hb_003894_170 Hb_001431_090--Hb_016333_010 Hb_168918_010 Hb_168918_010 Hb_001431_090--Hb_168918_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.70389 0.346306 19.9739 21.3868 0.516871 0.900621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0328158 0 0.0484219 1.96943 6.79263

CAGE analysis