Hb_003086_160

Information

Type -
Description -
Location Contig3086: 156857-157744
Sequence    

Annotation

kegg
ID pop:POPTR_0006s21590g
description POPTRDRAFT_417738; hypothetical protein
nr
ID XP_002308331.2
description hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
swissprot
ID Q9FLE8
description Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=2 SV=1
trembl
ID B9H9M0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s21590g PE=4 SV=2
Gene Ontology
ID GO:0005623
description glutaredoxin family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32597: 158656-162959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_160 0.0 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
2 Hb_002267_060 0.1359631505 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
3 Hb_033720_030 0.1362821994 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
4 Hb_000321_170 0.1386019057 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
5 Hb_000022_080 0.1388507514 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
6 Hb_012286_060 0.1622848975 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
7 Hb_028487_060 0.1628480227 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
8 Hb_000261_070 0.1633624722 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
9 Hb_014705_010 0.1645737758 - - hypothetical protein JCGZ_21106 [Jatropha curcas]
10 Hb_004195_070 0.165136281 - - cytochrome P450, putative [Ricinus communis]
11 Hb_005496_040 0.1736593441 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
12 Hb_143629_120 0.1738275263 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
13 Hb_000963_050 0.1758836977 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
14 Hb_005890_020 0.1771564777 - - putative plant disease resistance family protein [Populus trichocarpa]
15 Hb_011033_010 0.1814844331 - - ATP-binding cassette transporter, putative [Ricinus communis]
16 Hb_000977_200 0.1836001125 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Jatropha curcas]
17 Hb_008686_010 0.1862981991 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002045_210 0.1867109735 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
19 Hb_004093_030 0.1892905386 - - hypothetical protein RCOM_1406750 [Ricinus communis]
20 Hb_010889_010 0.189784862 - - PREDICTED: myosin-12 [Jatropha curcas]

Gene co-expression network

sample Hb_003086_160 Hb_003086_160 Hb_002267_060 Hb_002267_060 Hb_003086_160--Hb_002267_060 Hb_033720_030 Hb_033720_030 Hb_003086_160--Hb_033720_030 Hb_000321_170 Hb_000321_170 Hb_003086_160--Hb_000321_170 Hb_000022_080 Hb_000022_080 Hb_003086_160--Hb_000022_080 Hb_012286_060 Hb_012286_060 Hb_003086_160--Hb_012286_060 Hb_028487_060 Hb_028487_060 Hb_003086_160--Hb_028487_060 Hb_002267_060--Hb_000321_170 Hb_000120_930 Hb_000120_930 Hb_002267_060--Hb_000120_930 Hb_002045_210 Hb_002045_210 Hb_002267_060--Hb_002045_210 Hb_002267_060--Hb_028487_060 Hb_002267_060--Hb_000022_080 Hb_002276_080 Hb_002276_080 Hb_033720_030--Hb_002276_080 Hb_162472_010 Hb_162472_010 Hb_033720_030--Hb_162472_010 Hb_004195_070 Hb_004195_070 Hb_033720_030--Hb_004195_070 Hb_004223_060 Hb_004223_060 Hb_033720_030--Hb_004223_060 Hb_000922_400 Hb_000922_400 Hb_033720_030--Hb_000922_400 Hb_001025_130 Hb_001025_130 Hb_033720_030--Hb_001025_130 Hb_000321_170--Hb_002045_210 Hb_005496_040 Hb_005496_040 Hb_000321_170--Hb_005496_040 Hb_000321_170--Hb_000022_080 Hb_000321_170--Hb_000120_930 Hb_005890_020 Hb_005890_020 Hb_000321_170--Hb_005890_020 Hb_000022_080--Hb_005496_040 Hb_000022_080--Hb_002045_210 Hb_000022_080--Hb_004195_070 Hb_000441_130 Hb_000441_130 Hb_000022_080--Hb_000441_130 Hb_002818_060 Hb_002818_060 Hb_000022_080--Hb_002818_060 Hb_000030_020 Hb_000030_020 Hb_012286_060--Hb_000030_020 Hb_000963_050 Hb_000963_050 Hb_012286_060--Hb_000963_050 Hb_005348_150 Hb_005348_150 Hb_012286_060--Hb_005348_150 Hb_008511_040 Hb_008511_040 Hb_012286_060--Hb_008511_040 Hb_118939_010 Hb_118939_010 Hb_012286_060--Hb_118939_010 Hb_143629_120 Hb_143629_120 Hb_012286_060--Hb_143629_120 Hb_028487_060--Hb_000321_170 Hb_028487_060--Hb_033720_030 Hb_000261_070 Hb_000261_070 Hb_028487_060--Hb_000261_070 Hb_000342_040 Hb_000342_040 Hb_028487_060--Hb_000342_040 Hb_028487_060--Hb_005496_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.673879 1.12599 7.16547 9.95667 0.982232 0.195086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.253555 0.112099 2.62823

CAGE analysis