Hb_005348_150

Information

Type -
Description -
Location Contig5348: 128107-129521
Sequence    

Annotation

kegg
ID rcu:RCOM_0711030
description actin, putative
nr
ID XP_012077077.1
description PREDICTED: actin-100-like [Jatropha curcas]
swissprot
ID O65315
description Actin OS=Coleochaete scutata PE=2 SV=1
trembl
ID B9RR79
description Actin, putative OS=Ricinus communis GN=RCOM_0711030 PE=3 SV=1
Gene Ontology
ID GO:0005737
description actin-100-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47518: 124479-127253 , PASA_asmbl_47519: 128089-128825 , PASA_asmbl_47520: 129213-129656
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005348_150 0.0 - - PREDICTED: actin-100-like [Jatropha curcas]
2 Hb_012286_060 0.12463441 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
3 Hb_000030_020 0.1304217792 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
4 Hb_118939_010 0.1336648049 - - protein binding protein, putative [Ricinus communis]
5 Hb_119583_020 0.1588833876 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
6 Hb_000599_330 0.1623082924 - - hypothetical protein JCGZ_17661 [Jatropha curcas]
7 Hb_000388_080 0.1626497079 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
8 Hb_001195_130 0.1643927112 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001579_300 0.1660526459 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
10 Hb_143629_120 0.166139967 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
11 Hb_000008_200 0.1669496481 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
12 Hb_002026_020 0.1680510537 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
13 Hb_000069_300 0.1690617955 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
14 Hb_006925_050 0.172738307 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
15 Hb_008511_040 0.1763446214 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
16 Hb_000424_030 0.1773694454 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000165_090 0.1796478738 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 2-like [Jatropha curcas]
18 Hb_091318_010 0.1807134245 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
19 Hb_000011_070 0.1816121907 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
20 Hb_000349_200 0.1826452883 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 [Jatropha curcas]

Gene co-expression network

sample Hb_005348_150 Hb_005348_150 Hb_012286_060 Hb_012286_060 Hb_005348_150--Hb_012286_060 Hb_000030_020 Hb_000030_020 Hb_005348_150--Hb_000030_020 Hb_118939_010 Hb_118939_010 Hb_005348_150--Hb_118939_010 Hb_119583_020 Hb_119583_020 Hb_005348_150--Hb_119583_020 Hb_000599_330 Hb_000599_330 Hb_005348_150--Hb_000599_330 Hb_000388_080 Hb_000388_080 Hb_005348_150--Hb_000388_080 Hb_012286_060--Hb_000030_020 Hb_000963_050 Hb_000963_050 Hb_012286_060--Hb_000963_050 Hb_008511_040 Hb_008511_040 Hb_012286_060--Hb_008511_040 Hb_012286_060--Hb_118939_010 Hb_143629_120 Hb_143629_120 Hb_012286_060--Hb_143629_120 Hb_002026_020 Hb_002026_020 Hb_000030_020--Hb_002026_020 Hb_000165_090 Hb_000165_090 Hb_000030_020--Hb_000165_090 Hb_000030_020--Hb_000599_330 Hb_005245_140 Hb_005245_140 Hb_000030_020--Hb_005245_140 Hb_007044_090 Hb_007044_090 Hb_118939_010--Hb_007044_090 Hb_001579_300 Hb_001579_300 Hb_118939_010--Hb_001579_300 Hb_006925_050 Hb_006925_050 Hb_118939_010--Hb_006925_050 Hb_007483_060 Hb_007483_060 Hb_118939_010--Hb_007483_060 Hb_001123_110 Hb_001123_110 Hb_119583_020--Hb_001123_110 Hb_119583_020--Hb_006925_050 Hb_018133_100 Hb_018133_100 Hb_119583_020--Hb_018133_100 Hb_000984_220 Hb_000984_220 Hb_119583_020--Hb_000984_220 Hb_119583_020--Hb_001579_300 Hb_007304_030 Hb_007304_030 Hb_119583_020--Hb_007304_030 Hb_000599_330--Hb_143629_120 Hb_000599_330--Hb_000963_050 Hb_000599_330--Hb_012286_060 Hb_003029_120 Hb_003029_120 Hb_000599_330--Hb_003029_120 Hb_000011_070 Hb_000011_070 Hb_000599_330--Hb_000011_070 Hb_000076_250 Hb_000076_250 Hb_000388_080--Hb_000076_250 Hb_000357_070 Hb_000357_070 Hb_000388_080--Hb_000357_070 Hb_002028_110 Hb_002028_110 Hb_000388_080--Hb_002028_110 Hb_000322_030 Hb_000322_030 Hb_000388_080--Hb_000322_030 Hb_004994_330 Hb_004994_330 Hb_000388_080--Hb_004994_330 Hb_000388_080--Hb_001579_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.485768 0.872548 2.45049 3.2733 0.053578 0.215285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0871357 0.274157 0.127099 0.0687191 1.13086

CAGE analysis