Hb_119583_020

Information

Type -
Description -
Location Contig119583: 19167-19718
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01960g
description POPTRDRAFT_723531; hypothetical protein
nr
ID XP_012064819.1
description PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LII0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05516 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05894: 19057-19987
cDNA
(Sanger)
(ID:Location)		 010_M10.ab1: 19057-19704 , 021_M11.ab1: 19057-19724

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119583_020 0.0 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
2 Hb_001123_110 0.1094077155 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006925_050 0.1173164589 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
4 Hb_018133_100 0.133665076 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000984_220 0.1400556555 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
6 Hb_001579_300 0.1415048554 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
7 Hb_007304_030 0.1416399125 - - PREDICTED: uncharacterized protein LOC105635926 isoform X2 [Jatropha curcas]
8 Hb_029253_010 0.1438614977 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
9 Hb_005511_130 0.1438668102 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
10 Hb_000915_130 0.1453584596 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
11 Hb_004730_020 0.1515209972 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
12 Hb_000030_020 0.1517394107 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
13 Hb_012286_060 0.1535919206 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
14 Hb_007044_090 0.1547000244 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
15 Hb_000120_350 0.1547446738 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
16 Hb_002026_020 0.1551703236 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
17 Hb_118939_010 0.1554694429 - - protein binding protein, putative [Ricinus communis]
18 Hb_005348_150 0.1588833876 - - PREDICTED: actin-100-like [Jatropha curcas]
19 Hb_000076_250 0.1622247901 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002900_150 0.163205964 - - PREDICTED: syntaxin-81 [Jatropha curcas]

Gene co-expression network

sample Hb_119583_020 Hb_119583_020 Hb_001123_110 Hb_001123_110 Hb_119583_020--Hb_001123_110 Hb_006925_050 Hb_006925_050 Hb_119583_020--Hb_006925_050 Hb_018133_100 Hb_018133_100 Hb_119583_020--Hb_018133_100 Hb_000984_220 Hb_000984_220 Hb_119583_020--Hb_000984_220 Hb_001579_300 Hb_001579_300 Hb_119583_020--Hb_001579_300 Hb_007304_030 Hb_007304_030 Hb_119583_020--Hb_007304_030 Hb_000959_190 Hb_000959_190 Hb_001123_110--Hb_000959_190 Hb_002498_240 Hb_002498_240 Hb_001123_110--Hb_002498_240 Hb_005511_130 Hb_005511_130 Hb_001123_110--Hb_005511_130 Hb_001123_110--Hb_000984_220 Hb_001160_110 Hb_001160_110 Hb_001123_110--Hb_001160_110 Hb_029253_010 Hb_029253_010 Hb_006925_050--Hb_029253_010 Hb_006925_050--Hb_005511_130 Hb_005357_110 Hb_005357_110 Hb_006925_050--Hb_005357_110 Hb_004730_020 Hb_004730_020 Hb_006925_050--Hb_004730_020 Hb_006829_070 Hb_006829_070 Hb_006925_050--Hb_006829_070 Hb_001847_050 Hb_001847_050 Hb_006925_050--Hb_001847_050 Hb_002026_020 Hb_002026_020 Hb_018133_100--Hb_002026_020 Hb_001328_050 Hb_001328_050 Hb_018133_100--Hb_001328_050 Hb_002151_010 Hb_002151_010 Hb_018133_100--Hb_002151_010 Hb_004324_210 Hb_004324_210 Hb_018133_100--Hb_004324_210 Hb_000042_110 Hb_000042_110 Hb_018133_100--Hb_000042_110 Hb_000984_220--Hb_005511_130 Hb_000984_220--Hb_004730_020 Hb_000800_020 Hb_000800_020 Hb_000984_220--Hb_000800_020 Hb_000984_220--Hb_001160_110 Hb_003687_080 Hb_003687_080 Hb_000984_220--Hb_003687_080 Hb_004158_050 Hb_004158_050 Hb_000984_220--Hb_004158_050 Hb_001579_300--Hb_004730_020 Hb_000152_440 Hb_000152_440 Hb_001579_300--Hb_000152_440 Hb_001579_300--Hb_005511_130 Hb_000388_080 Hb_000388_080 Hb_001579_300--Hb_000388_080 Hb_001579_300--Hb_006925_050 Hb_000527_080 Hb_000527_080 Hb_001579_300--Hb_000527_080 Hb_000076_250 Hb_000076_250 Hb_007304_030--Hb_000076_250 Hb_000465_440 Hb_000465_440 Hb_007304_030--Hb_000465_440 Hb_005496_020 Hb_005496_020 Hb_007304_030--Hb_005496_020 Hb_007304_030--Hb_001579_300 Hb_000152_490 Hb_000152_490 Hb_007304_030--Hb_000152_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.02498 17.248 66.5284 57.9129 7.41078 7.29996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.59581 10.6269 3.10863 1.59682 24.7378

CAGE analysis