Hb_001847_050

Information

Type -
Description -
Location Contig1847: 43484-47974
Sequence    

Annotation

kegg
ID cit:102616278
description probable LRR receptor-like serine/threonine-protein kinase At3g47570-like
nr
ID KDO38531.1
description hypothetical protein CISIN_1g019843mg [Citrus sinensis]
swissprot
ID Q9SR87
description Probable L-type lectin-domain containing receptor kinase VI.1 OS=Arabidopsis thaliana GN=LECRK61 PE=2 SV=1
trembl
ID A0A067DIT9
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019843mg PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at3g47570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18086: 46633-47453
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001847_050 0.0 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
2 Hb_002217_320 0.0947631035 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
3 Hb_012807_150 0.1052579832 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
4 Hb_001195_130 0.1073266967 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006925_050 0.1093500213 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
6 Hb_004730_020 0.1149347013 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
7 Hb_000342_170 0.1236354808 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
8 Hb_000139_300 0.124052064 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
9 Hb_003680_030 0.1248551006 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
10 Hb_003540_080 0.1258916235 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_005511_130 0.1275878266 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
12 Hb_005357_110 0.1281595816 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
13 Hb_026549_070 0.1304752946 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
14 Hb_001579_300 0.1310663151 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
15 Hb_000638_060 0.1311359464 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
16 Hb_002097_100 0.1316832431 - - protein with unknown function [Ricinus communis]
17 Hb_000152_440 0.1326098949 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
18 Hb_000935_040 0.134209032 - - Uncharacterized protein isoform 2 [Theobroma cacao]
19 Hb_006829_070 0.1350718523 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
20 Hb_000527_080 0.1371566393 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]

Gene co-expression network

sample Hb_001847_050 Hb_001847_050 Hb_002217_320 Hb_002217_320 Hb_001847_050--Hb_002217_320 Hb_012807_150 Hb_012807_150 Hb_001847_050--Hb_012807_150 Hb_001195_130 Hb_001195_130 Hb_001847_050--Hb_001195_130 Hb_006925_050 Hb_006925_050 Hb_001847_050--Hb_006925_050 Hb_004730_020 Hb_004730_020 Hb_001847_050--Hb_004730_020 Hb_000342_170 Hb_000342_170 Hb_001847_050--Hb_000342_170 Hb_012762_060 Hb_012762_060 Hb_002217_320--Hb_012762_060 Hb_000638_060 Hb_000638_060 Hb_002217_320--Hb_000638_060 Hb_003964_080 Hb_003964_080 Hb_002217_320--Hb_003964_080 Hb_003680_030 Hb_003680_030 Hb_002217_320--Hb_003680_030 Hb_006829_070 Hb_006829_070 Hb_002217_320--Hb_006829_070 Hb_000283_140 Hb_000283_140 Hb_012807_150--Hb_000283_140 Hb_000271_220 Hb_000271_220 Hb_012807_150--Hb_000271_220 Hb_006120_060 Hb_006120_060 Hb_012807_150--Hb_006120_060 Hb_000603_020 Hb_000603_020 Hb_012807_150--Hb_000603_020 Hb_000327_360 Hb_000327_360 Hb_012807_150--Hb_000327_360 Hb_012807_150--Hb_000638_060 Hb_001579_300 Hb_001579_300 Hb_001195_130--Hb_001579_300 Hb_001195_130--Hb_006925_050 Hb_000856_400 Hb_000856_400 Hb_001195_130--Hb_000856_400 Hb_001195_130--Hb_004730_020 Hb_009222_110 Hb_009222_110 Hb_001195_130--Hb_009222_110 Hb_029253_010 Hb_029253_010 Hb_006925_050--Hb_029253_010 Hb_005511_130 Hb_005511_130 Hb_006925_050--Hb_005511_130 Hb_005357_110 Hb_005357_110 Hb_006925_050--Hb_005357_110 Hb_006925_050--Hb_004730_020 Hb_006925_050--Hb_006829_070 Hb_004730_020--Hb_005511_130 Hb_004730_020--Hb_001579_300 Hb_000032_410 Hb_000032_410 Hb_004730_020--Hb_000032_410 Hb_004730_020--Hb_005357_110 Hb_000527_080 Hb_000527_080 Hb_004730_020--Hb_000527_080 Hb_003740_020 Hb_003740_020 Hb_004730_020--Hb_003740_020 Hb_000510_150 Hb_000510_150 Hb_000342_170--Hb_000510_150 Hb_132082_010 Hb_132082_010 Hb_000342_170--Hb_132082_010 Hb_000665_170 Hb_000665_170 Hb_000342_170--Hb_000665_170 Hb_003777_030 Hb_003777_030 Hb_000342_170--Hb_003777_030 Hb_000860_060 Hb_000860_060 Hb_000342_170--Hb_000860_060 Hb_002687_200 Hb_002687_200 Hb_000342_170--Hb_002687_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.11183 3.17818 7.89172 14.6267 1.20861 1.6465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.56495 1.40541 1.82418 2.06218 6.89018

CAGE analysis