Hb_007304_030

Information

Type -
Description -
Location Contig7304: 60512-64733
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06330g
description POPTRDRAFT_798608; hypothetical protein
nr
ID XP_012074456.1
description PREDICTED: uncharacterized protein LOC105635926 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIH7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10002 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55923: 60553-66075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007304_030 0.0 - - PREDICTED: uncharacterized protein LOC105635926 isoform X2 [Jatropha curcas]
2 Hb_000076_250 0.1189192098 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000465_440 0.1332995454 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
4 Hb_005496_020 0.1333072388 - - PREDICTED: uncharacterized protein LOC105630867 [Jatropha curcas]
5 Hb_001579_300 0.1352580481 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
6 Hb_119583_020 0.1416399125 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
7 Hb_000152_490 0.1442146497 - - PREDICTED: (6-4)DNA photolyase [Jatropha curcas]
8 Hb_006925_050 0.1449911182 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
9 Hb_001301_330 0.1450958902 - - OTU-like cysteine protease family protein [Populus trichocarpa]
10 Hb_000984_220 0.1487363683 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
11 Hb_005511_130 0.1490909222 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
12 Hb_004586_040 0.1503496989 transcription factor TF Family: MIKC K-box region and MADS-box transcription factor family protein [Theobroma cacao]
13 Hb_006816_190 0.1506454801 - - calreticulin family protein [Populus trichocarpa]
14 Hb_001793_020 0.1527921225 - - PREDICTED: uncharacterized protein LOC105628624 [Jatropha curcas]
15 Hb_003640_050 0.155980756 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_000538_130 0.1560639508 - - phytoene synthase 2 [Manihot esculenta]
17 Hb_004730_020 0.1561844317 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
18 Hb_143004_020 0.1581739675 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
19 Hb_002488_010 0.1599675203 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
20 Hb_000388_080 0.161218713 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]

Gene co-expression network

sample Hb_007304_030 Hb_007304_030 Hb_000076_250 Hb_000076_250 Hb_007304_030--Hb_000076_250 Hb_000465_440 Hb_000465_440 Hb_007304_030--Hb_000465_440 Hb_005496_020 Hb_005496_020 Hb_007304_030--Hb_005496_020 Hb_001579_300 Hb_001579_300 Hb_007304_030--Hb_001579_300 Hb_119583_020 Hb_119583_020 Hb_007304_030--Hb_119583_020 Hb_000152_490 Hb_000152_490 Hb_007304_030--Hb_000152_490 Hb_000388_080 Hb_000388_080 Hb_000076_250--Hb_000388_080 Hb_003640_050 Hb_003640_050 Hb_000076_250--Hb_003640_050 Hb_000032_410 Hb_000032_410 Hb_000076_250--Hb_000032_410 Hb_000996_080 Hb_000996_080 Hb_000076_250--Hb_000996_080 Hb_003020_250 Hb_003020_250 Hb_000076_250--Hb_003020_250 Hb_000689_050 Hb_000689_050 Hb_000076_250--Hb_000689_050 Hb_000665_270 Hb_000665_270 Hb_000465_440--Hb_000665_270 Hb_009288_040 Hb_009288_040 Hb_000465_440--Hb_009288_040 Hb_003752_090 Hb_003752_090 Hb_000465_440--Hb_003752_090 Hb_000336_200 Hb_000336_200 Hb_000465_440--Hb_000336_200 Hb_001793_020 Hb_001793_020 Hb_000465_440--Hb_001793_020 Hb_001649_030 Hb_001649_030 Hb_000465_440--Hb_001649_030 Hb_004730_020 Hb_004730_020 Hb_005496_020--Hb_004730_020 Hb_005496_020--Hb_000689_050 Hb_005496_020--Hb_001579_300 Hb_000984_220 Hb_000984_220 Hb_005496_020--Hb_000984_220 Hb_006925_050 Hb_006925_050 Hb_005496_020--Hb_006925_050 Hb_005074_040 Hb_005074_040 Hb_005496_020--Hb_005074_040 Hb_001579_300--Hb_004730_020 Hb_000152_440 Hb_000152_440 Hb_001579_300--Hb_000152_440 Hb_005511_130 Hb_005511_130 Hb_001579_300--Hb_005511_130 Hb_001579_300--Hb_000388_080 Hb_001579_300--Hb_006925_050 Hb_000527_080 Hb_000527_080 Hb_001579_300--Hb_000527_080 Hb_001123_110 Hb_001123_110 Hb_119583_020--Hb_001123_110 Hb_119583_020--Hb_006925_050 Hb_018133_100 Hb_018133_100 Hb_119583_020--Hb_018133_100 Hb_119583_020--Hb_000984_220 Hb_119583_020--Hb_001579_300 Hb_005333_200 Hb_005333_200 Hb_000152_490--Hb_005333_200 Hb_002759_120 Hb_002759_120 Hb_000152_490--Hb_002759_120 Hb_000108_150 Hb_000108_150 Hb_000152_490--Hb_000108_150 Hb_001269_500 Hb_001269_500 Hb_000152_490--Hb_001269_500 Hb_000152_490--Hb_003752_090 Hb_000152_490--Hb_000465_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.18788 9.57412 76.8362 67.1578 15.7182 13.3441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3524 10.1571 2.50963 6.29486 48.5597

CAGE analysis