Hb_005496_020

Information

Type -
Description -
Location Contig5496: 31781-33029
Sequence    

Annotation

kegg
ID rcu:RCOM_1587890
description hypothetical protein
nr
ID XP_012068242.1
description PREDICTED: uncharacterized protein LOC105630867 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9R721
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1587890 PE=4 SV=1
Gene Ontology
ID GO:0044237
description elongation factor 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48199: 31477-32846 , PASA_asmbl_48200: 31695-33376
cDNA
(Sanger)
(ID:Location)		 002_G12.ab1: 31695-33321 , 021_I02.ab1: 31697-33376

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005496_020 0.0 - - PREDICTED: uncharacterized protein LOC105630867 [Jatropha curcas]
2 Hb_004730_020 0.1114281455 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
3 Hb_000689_050 0.1220929139 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001579_300 0.1270460781 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
5 Hb_000984_220 0.127465535 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
6 Hb_006925_050 0.1284430592 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
7 Hb_005074_040 0.131307268 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000388_080 0.1315943987 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
9 Hb_002028_110 0.1322724173 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
10 Hb_007304_030 0.1333072388 - - PREDICTED: uncharacterized protein LOC105635926 isoform X2 [Jatropha curcas]
11 Hb_000076_250 0.1343027602 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000086_210 0.1347272234 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_003640_050 0.1398334701 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_005511_130 0.1407428081 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
15 Hb_000152_440 0.1419284429 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
16 Hb_014497_010 0.1500073837 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
17 Hb_002182_020 0.1504709897 - - Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative [Ricinus communis]
18 Hb_029253_010 0.1520424387 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
19 Hb_003740_020 0.1538291181 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_008025_010 0.1551134125 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_005496_020 Hb_005496_020 Hb_004730_020 Hb_004730_020 Hb_005496_020--Hb_004730_020 Hb_000689_050 Hb_000689_050 Hb_005496_020--Hb_000689_050 Hb_001579_300 Hb_001579_300 Hb_005496_020--Hb_001579_300 Hb_000984_220 Hb_000984_220 Hb_005496_020--Hb_000984_220 Hb_006925_050 Hb_006925_050 Hb_005496_020--Hb_006925_050 Hb_005074_040 Hb_005074_040 Hb_005496_020--Hb_005074_040 Hb_005511_130 Hb_005511_130 Hb_004730_020--Hb_005511_130 Hb_004730_020--Hb_001579_300 Hb_000032_410 Hb_000032_410 Hb_004730_020--Hb_000032_410 Hb_005357_110 Hb_005357_110 Hb_004730_020--Hb_005357_110 Hb_000527_080 Hb_000527_080 Hb_004730_020--Hb_000527_080 Hb_003740_020 Hb_003740_020 Hb_004730_020--Hb_003740_020 Hb_003050_360 Hb_003050_360 Hb_000689_050--Hb_003050_360 Hb_000689_050--Hb_005074_040 Hb_014497_010 Hb_014497_010 Hb_000689_050--Hb_014497_010 Hb_000996_080 Hb_000996_080 Hb_000689_050--Hb_000996_080 Hb_006120_060 Hb_006120_060 Hb_000689_050--Hb_006120_060 Hb_004545_080 Hb_004545_080 Hb_000689_050--Hb_004545_080 Hb_000152_440 Hb_000152_440 Hb_001579_300--Hb_000152_440 Hb_001579_300--Hb_005511_130 Hb_000388_080 Hb_000388_080 Hb_001579_300--Hb_000388_080 Hb_001579_300--Hb_006925_050 Hb_001579_300--Hb_000527_080 Hb_000984_220--Hb_005511_130 Hb_000984_220--Hb_004730_020 Hb_000800_020 Hb_000800_020 Hb_000984_220--Hb_000800_020 Hb_001160_110 Hb_001160_110 Hb_000984_220--Hb_001160_110 Hb_003687_080 Hb_003687_080 Hb_000984_220--Hb_003687_080 Hb_004158_050 Hb_004158_050 Hb_000984_220--Hb_004158_050 Hb_029253_010 Hb_029253_010 Hb_006925_050--Hb_029253_010 Hb_006925_050--Hb_005511_130 Hb_006925_050--Hb_005357_110 Hb_006925_050--Hb_004730_020 Hb_006829_070 Hb_006829_070 Hb_006925_050--Hb_006829_070 Hb_001847_050 Hb_001847_050 Hb_006925_050--Hb_001847_050 Hb_005074_040--Hb_014497_010 Hb_000139_300 Hb_000139_300 Hb_005074_040--Hb_000139_300 Hb_000012_080 Hb_000012_080 Hb_005074_040--Hb_000012_080 Hb_000086_210 Hb_000086_210 Hb_005074_040--Hb_000086_210 Hb_008025_010 Hb_008025_010 Hb_005074_040--Hb_008025_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.2488 57.3698 395.062 386.379 24.7439 96.9555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.8869 44.3569 48.8638 59.603 250.96

CAGE analysis