Hb_000599_330

Information

Type -
Description -
Location Contig599: 318193-319629
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24920g
description POPTRDRAFT_862104; hypothetical protein
nr
ID KDP26503.1
description hypothetical protein JCGZ_17661 [Jatropha curcas]
swissprot
ID Q5PP26
description Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1
trembl
ID A0A067JUK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17661 PE=4 SV=1
Gene Ontology
ID GO:0005515
description piriformospora indica-insensitive protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50504: 318877-319358 , PASA_asmbl_50505: 319437-319551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_330 0.0 - - hypothetical protein JCGZ_17661 [Jatropha curcas]
2 Hb_143629_120 0.1133964532 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
3 Hb_000030_020 0.1360897777 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
4 Hb_000963_050 0.1404142141 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
5 Hb_012286_060 0.1427187185 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
6 Hb_003029_120 0.144650597 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
7 Hb_000011_070 0.1556167307 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
8 Hb_000692_100 0.156267389 - - calcium-dependent protein kinase, putative [Ricinus communis]
9 Hb_000271_220 0.1565174274 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
10 Hb_000049_270 0.1592877953 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
11 Hb_000482_120 0.1595525026 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
12 Hb_008686_010 0.1602203127 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002026_020 0.1606911413 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
14 Hb_005348_150 0.1623082924 - - PREDICTED: actin-100-like [Jatropha curcas]
15 Hb_006570_090 0.1643991852 - - tubulin beta chain, putative [Ricinus communis]
16 Hb_000417_050 0.1670295743 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
17 Hb_001188_050 0.167484178 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000453_020 0.1688091403 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_001951_190 0.1690614472 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
20 Hb_004223_240 0.1727747588 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]

Gene co-expression network

sample Hb_000599_330 Hb_000599_330 Hb_143629_120 Hb_143629_120 Hb_000599_330--Hb_143629_120 Hb_000030_020 Hb_000030_020 Hb_000599_330--Hb_000030_020 Hb_000963_050 Hb_000963_050 Hb_000599_330--Hb_000963_050 Hb_012286_060 Hb_012286_060 Hb_000599_330--Hb_012286_060 Hb_003029_120 Hb_003029_120 Hb_000599_330--Hb_003029_120 Hb_000011_070 Hb_000011_070 Hb_000599_330--Hb_000011_070 Hb_008686_010 Hb_008686_010 Hb_143629_120--Hb_008686_010 Hb_001195_550 Hb_001195_550 Hb_143629_120--Hb_001195_550 Hb_015941_010 Hb_015941_010 Hb_143629_120--Hb_015941_010 Hb_169893_010 Hb_169893_010 Hb_143629_120--Hb_169893_010 Hb_143629_120--Hb_012286_060 Hb_002026_020 Hb_002026_020 Hb_000030_020--Hb_002026_020 Hb_000030_020--Hb_012286_060 Hb_000165_090 Hb_000165_090 Hb_000030_020--Hb_000165_090 Hb_005348_150 Hb_005348_150 Hb_000030_020--Hb_005348_150 Hb_005245_140 Hb_005245_140 Hb_000030_020--Hb_005245_140 Hb_000274_050 Hb_000274_050 Hb_000963_050--Hb_000274_050 Hb_000963_050--Hb_012286_060 Hb_001188_050 Hb_001188_050 Hb_000963_050--Hb_001188_050 Hb_020805_040 Hb_020805_040 Hb_000963_050--Hb_020805_040 Hb_000963_050--Hb_143629_120 Hb_118283_010 Hb_118283_010 Hb_000963_050--Hb_118283_010 Hb_012286_060--Hb_005348_150 Hb_008511_040 Hb_008511_040 Hb_012286_060--Hb_008511_040 Hb_118939_010 Hb_118939_010 Hb_012286_060--Hb_118939_010 Hb_001946_200 Hb_001946_200 Hb_003029_120--Hb_001946_200 Hb_070498_010 Hb_070498_010 Hb_003029_120--Hb_070498_010 Hb_000453_020 Hb_000453_020 Hb_003029_120--Hb_000453_020 Hb_003029_120--Hb_001195_550 Hb_000482_120 Hb_000482_120 Hb_003029_120--Hb_000482_120 Hb_012404_020 Hb_012404_020 Hb_003029_120--Hb_012404_020 Hb_000349_200 Hb_000349_200 Hb_000011_070--Hb_000349_200 Hb_000271_220 Hb_000271_220 Hb_000011_070--Hb_000271_220 Hb_000603_020 Hb_000603_020 Hb_000011_070--Hb_000603_020 Hb_011828_010 Hb_011828_010 Hb_000011_070--Hb_011828_010 Hb_003929_230 Hb_003929_230 Hb_000011_070--Hb_003929_230 Hb_000071_160 Hb_000071_160 Hb_000011_070--Hb_000071_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0716386 0.477643 1.03133 1.56822 0.0693123 0.179455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0258164 0.0484219 0.0824891 0.646917

CAGE analysis