Hb_118283_010

Information

Type -
Description -
Location Contig118283: 3-194
Sequence    

Annotation

kegg
ID rcu:RCOM_1691030
description hypothetical protein
nr
ID XP_002509922.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCN8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118283_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_020805_040 0.1076226333 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [Jatropha curcas]
3 Hb_000544_200 0.1296435047 - - PREDICTED: uncharacterized protein LOC105647171 [Jatropha curcas]
4 Hb_000963_050 0.1342120897 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
5 Hb_012286_060 0.1449538077 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
6 Hb_004586_040 0.1549432314 transcription factor TF Family: MIKC K-box region and MADS-box transcription factor family protein [Theobroma cacao]
7 Hb_003688_010 0.1557478129 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
8 Hb_001862_050 0.1588233527 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
9 Hb_001188_050 0.1625723293 - - conserved hypothetical protein [Ricinus communis]
10 Hb_030685_010 0.1628152639 - - -
11 Hb_018133_070 0.1637136123 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
12 Hb_008686_010 0.1670476905 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001510_040 0.1686340281 - - PREDICTED: 125 kDa kinesin-related protein [Jatropha curcas]
14 Hb_004129_060 0.1701951678 - - triacylglycerol lipase, putative [Ricinus communis]
15 Hb_000321_170 0.1706837326 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
16 Hb_047659_010 0.1711213395 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000120_930 0.1719256388 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
18 Hb_001195_550 0.1739523243 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
19 Hb_169893_010 0.1778599051 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
20 Hb_003992_280 0.1778685746 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]

Gene co-expression network

sample Hb_118283_010 Hb_118283_010 Hb_020805_040 Hb_020805_040 Hb_118283_010--Hb_020805_040 Hb_000544_200 Hb_000544_200 Hb_118283_010--Hb_000544_200 Hb_000963_050 Hb_000963_050 Hb_118283_010--Hb_000963_050 Hb_012286_060 Hb_012286_060 Hb_118283_010--Hb_012286_060 Hb_004586_040 Hb_004586_040 Hb_118283_010--Hb_004586_040 Hb_003688_010 Hb_003688_010 Hb_118283_010--Hb_003688_010 Hb_020805_040--Hb_000963_050 Hb_003540_120 Hb_003540_120 Hb_020805_040--Hb_003540_120 Hb_030685_010 Hb_030685_010 Hb_020805_040--Hb_030685_010 Hb_001823_090 Hb_001823_090 Hb_020805_040--Hb_001823_090 Hb_000320_310 Hb_000320_310 Hb_020805_040--Hb_000320_310 Hb_000544_200--Hb_004586_040 Hb_000544_200--Hb_003688_010 Hb_000544_200--Hb_000963_050 Hb_002876_200 Hb_002876_200 Hb_000544_200--Hb_002876_200 Hb_000274_050 Hb_000274_050 Hb_000544_200--Hb_000274_050 Hb_000963_050--Hb_000274_050 Hb_000963_050--Hb_012286_060 Hb_001188_050 Hb_001188_050 Hb_000963_050--Hb_001188_050 Hb_143629_120 Hb_143629_120 Hb_000963_050--Hb_143629_120 Hb_000030_020 Hb_000030_020 Hb_012286_060--Hb_000030_020 Hb_005348_150 Hb_005348_150 Hb_012286_060--Hb_005348_150 Hb_008511_040 Hb_008511_040 Hb_012286_060--Hb_008511_040 Hb_118939_010 Hb_118939_010 Hb_012286_060--Hb_118939_010 Hb_012286_060--Hb_143629_120 Hb_001488_290 Hb_001488_290 Hb_004586_040--Hb_001488_290 Hb_004586_040--Hb_002876_200 Hb_004586_040--Hb_003688_010 Hb_000076_250 Hb_000076_250 Hb_004586_040--Hb_000076_250 Hb_000483_080 Hb_000483_080 Hb_004586_040--Hb_000483_080 Hb_000668_060 Hb_000668_060 Hb_003688_010--Hb_000668_060 Hb_003688_010--Hb_001488_290 Hb_003688_010--Hb_012286_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.93298 10.2317 117.301 133.704 5.69062 18.126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.33937 4.34958 0 12.5529 32.5671

CAGE analysis