Hb_000544_200

Information

Type -
Description -
Location Contig544: 305599-308993
Sequence    

Annotation

kegg
ID pop:POPTR_0012s04450g
description POPTRDRAFT_772619; hypothetical protein
nr
ID XP_012088560.1
description PREDICTED: uncharacterized protein LOC105647171 [Jatropha curcas]
swissprot
ID Q6GX86
description Uncharacterized protein C17orf53 homolog OS=Rattus norvegicus PE=2 SV=1
trembl
ID B9I2E6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s04450g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_200 0.0 - - PREDICTED: uncharacterized protein LOC105647171 [Jatropha curcas]
2 Hb_118283_010 0.1296435047 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004586_040 0.1313339679 transcription factor TF Family: MIKC K-box region and MADS-box transcription factor family protein [Theobroma cacao]
4 Hb_003688_010 0.144312406 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
5 Hb_000963_050 0.1443341237 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
6 Hb_002876_200 0.1460304862 - - PREDICTED: uncharacterized protein LOC105641209 isoform X1 [Jatropha curcas]
7 Hb_000274_050 0.1477779607 - - Squalene monooxygenase, putative [Ricinus communis]
8 Hb_001188_050 0.1512403811 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001488_290 0.1623787494 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
10 Hb_186247_010 0.1635975697 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
11 Hb_001862_050 0.1711431846 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
12 Hb_000077_110 0.1716410732 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
13 Hb_030685_010 0.1725895367 - - -
14 Hb_020805_040 0.172860318 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [Jatropha curcas]
15 Hb_012286_060 0.1735479106 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
16 Hb_018133_070 0.1746490899 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
17 Hb_002965_160 0.182166856 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
18 Hb_003540_120 0.186985655 - - calmodulin binding protein, putative [Ricinus communis]
19 Hb_001221_060 0.1888891514 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
20 Hb_000321_170 0.1892304604 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_000544_200 Hb_000544_200 Hb_118283_010 Hb_118283_010 Hb_000544_200--Hb_118283_010 Hb_004586_040 Hb_004586_040 Hb_000544_200--Hb_004586_040 Hb_003688_010 Hb_003688_010 Hb_000544_200--Hb_003688_010 Hb_000963_050 Hb_000963_050 Hb_000544_200--Hb_000963_050 Hb_002876_200 Hb_002876_200 Hb_000544_200--Hb_002876_200 Hb_000274_050 Hb_000274_050 Hb_000544_200--Hb_000274_050 Hb_020805_040 Hb_020805_040 Hb_118283_010--Hb_020805_040 Hb_118283_010--Hb_000963_050 Hb_012286_060 Hb_012286_060 Hb_118283_010--Hb_012286_060 Hb_118283_010--Hb_004586_040 Hb_118283_010--Hb_003688_010 Hb_001488_290 Hb_001488_290 Hb_004586_040--Hb_001488_290 Hb_004586_040--Hb_002876_200 Hb_004586_040--Hb_003688_010 Hb_000076_250 Hb_000076_250 Hb_004586_040--Hb_000076_250 Hb_000483_080 Hb_000483_080 Hb_004586_040--Hb_000483_080 Hb_000668_060 Hb_000668_060 Hb_003688_010--Hb_000668_060 Hb_003688_010--Hb_001488_290 Hb_003688_010--Hb_012286_060 Hb_000963_050--Hb_000274_050 Hb_000963_050--Hb_012286_060 Hb_001188_050 Hb_001188_050 Hb_000963_050--Hb_001188_050 Hb_000963_050--Hb_020805_040 Hb_143629_120 Hb_143629_120 Hb_000963_050--Hb_143629_120 Hb_002876_200--Hb_001488_290 Hb_050847_040 Hb_050847_040 Hb_002876_200--Hb_050847_040 Hb_002876_200--Hb_000274_050 Hb_005000_010 Hb_005000_010 Hb_002876_200--Hb_005000_010 Hb_000086_180 Hb_000086_180 Hb_002876_200--Hb_000086_180 Hb_000274_050--Hb_001188_050 Hb_000274_050--Hb_005000_010 Hb_001040_080 Hb_001040_080 Hb_000274_050--Hb_001040_080 Hb_001439_210 Hb_001439_210 Hb_000274_050--Hb_001439_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0689368 0.160487 1.10661 1.13834 0.162241 0.145744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0700374 0 0 0.176196 0.2869

CAGE analysis