Hb_003688_010

Information

Type -
Description -
Location Contig3688: 9481-14354
Sequence    

Annotation

kegg
ID rcu:RCOM_1469900
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_012080369.1
description PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
swissprot
ID Q9FZ86
description PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana GN=PDCB3 PE=1 SV=1
trembl
ID A0A067K5E2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11713 PE=4 SV=1
Gene Ontology
ID GO:0016787
description plasmodesmata callose-binding protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37953: 10269-13256 , PASA_asmbl_37954: 9515-13798 , PASA_asmbl_37956: 11694-11901
cDNA
(Sanger)
(ID:Location)		 012_C15.ab1: 9508-13650

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_010 0.0 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
2 Hb_004586_040 0.1183914902 transcription factor TF Family: MIKC K-box region and MADS-box transcription factor family protein [Theobroma cacao]
3 Hb_000544_200 0.144312406 - - PREDICTED: uncharacterized protein LOC105647171 [Jatropha curcas]
4 Hb_118283_010 0.1557478129 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000668_060 0.1600376431 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
6 Hb_001488_290 0.1628098344 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
7 Hb_012286_060 0.1671521286 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
8 Hb_000077_110 0.1701818727 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
9 Hb_004730_020 0.1708910696 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
10 Hb_001579_300 0.1724044002 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
11 Hb_003605_040 0.1736808766 - - PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]
12 Hb_005511_130 0.1771476561 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
13 Hb_002876_200 0.1799294873 - - PREDICTED: uncharacterized protein LOC105641209 isoform X1 [Jatropha curcas]
14 Hb_000984_220 0.1817900885 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
15 Hb_186247_010 0.1821861056 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
16 Hb_007304_030 0.1856466478 - - PREDICTED: uncharacterized protein LOC105635926 isoform X2 [Jatropha curcas]
17 Hb_002498_240 0.1857556071 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
18 Hb_001366_170 0.1857787079 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
19 Hb_000963_050 0.1865653031 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
20 Hb_000960_090 0.1866601206 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003688_010 Hb_003688_010 Hb_004586_040 Hb_004586_040 Hb_003688_010--Hb_004586_040 Hb_000544_200 Hb_000544_200 Hb_003688_010--Hb_000544_200 Hb_118283_010 Hb_118283_010 Hb_003688_010--Hb_118283_010 Hb_000668_060 Hb_000668_060 Hb_003688_010--Hb_000668_060 Hb_001488_290 Hb_001488_290 Hb_003688_010--Hb_001488_290 Hb_012286_060 Hb_012286_060 Hb_003688_010--Hb_012286_060 Hb_004586_040--Hb_001488_290 Hb_002876_200 Hb_002876_200 Hb_004586_040--Hb_002876_200 Hb_004586_040--Hb_000544_200 Hb_000076_250 Hb_000076_250 Hb_004586_040--Hb_000076_250 Hb_000483_080 Hb_000483_080 Hb_004586_040--Hb_000483_080 Hb_000544_200--Hb_118283_010 Hb_000963_050 Hb_000963_050 Hb_000544_200--Hb_000963_050 Hb_000544_200--Hb_002876_200 Hb_000274_050 Hb_000274_050 Hb_000544_200--Hb_000274_050 Hb_020805_040 Hb_020805_040 Hb_118283_010--Hb_020805_040 Hb_118283_010--Hb_000963_050 Hb_118283_010--Hb_012286_060 Hb_118283_010--Hb_004586_040 Hb_000035_080 Hb_000035_080 Hb_000668_060--Hb_000035_080 Hb_000320_050 Hb_000320_050 Hb_000668_060--Hb_000320_050 Hb_003964_080 Hb_003964_080 Hb_000668_060--Hb_003964_080 Hb_000260_650 Hb_000260_650 Hb_000668_060--Hb_000260_650 Hb_074399_010 Hb_074399_010 Hb_000668_060--Hb_074399_010 Hb_000940_210 Hb_000940_210 Hb_000668_060--Hb_000940_210 Hb_001488_290--Hb_002876_200 Hb_000086_180 Hb_000086_180 Hb_001488_290--Hb_000086_180 Hb_050847_040 Hb_050847_040 Hb_001488_290--Hb_050847_040 Hb_002999_030 Hb_002999_030 Hb_001488_290--Hb_002999_030 Hb_001141_050 Hb_001141_050 Hb_001488_290--Hb_001141_050 Hb_000030_020 Hb_000030_020 Hb_012286_060--Hb_000030_020 Hb_012286_060--Hb_000963_050 Hb_005348_150 Hb_005348_150 Hb_012286_060--Hb_005348_150 Hb_008511_040 Hb_008511_040 Hb_012286_060--Hb_008511_040 Hb_118939_010 Hb_118939_010 Hb_012286_060--Hb_118939_010 Hb_143629_120 Hb_143629_120 Hb_012286_060--Hb_143629_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.1053 4.67254 59.3415 59.5614 11.4194 8.74404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.42884 2.27124 2.93147 6.89623 12.1012

CAGE analysis