Hb_000030_020

Information

Type -
Description -
Location Contig30: 17549-17999
Sequence    

Annotation

kegg
ID rcu:RCOM_1121640
description hypothetical protein
nr
ID XP_011021479.1
description PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9SHF7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1121640 PE=4 SV=1
Gene Ontology
ID GO:0008168
description methyltransferase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31476: 17430-18118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_020 0.0 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
2 Hb_002026_020 0.1131513226 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
3 Hb_012286_060 0.1139494483 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
4 Hb_000165_090 0.1150937644 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 2-like [Jatropha curcas]
5 Hb_005348_150 0.1304217792 - - PREDICTED: actin-100-like [Jatropha curcas]
6 Hb_000599_330 0.1360897777 - - hypothetical protein JCGZ_17661 [Jatropha curcas]
7 Hb_005245_140 0.1371166383 - - PREDICTED: ribonuclease 2 [Jatropha curcas]
8 Hb_143629_120 0.1394438451 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
9 Hb_119583_020 0.1517394107 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
10 Hb_000424_030 0.1535405061 - - conserved hypothetical protein [Ricinus communis]
11 Hb_091318_010 0.1557864848 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
12 Hb_001951_190 0.1606792598 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
13 Hb_006829_070 0.1611985691 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
14 Hb_118939_010 0.1667132165 - - protein binding protein, putative [Ricinus communis]
15 Hb_008511_040 0.1686206049 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
16 Hb_006925_050 0.1690812108 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
17 Hb_001328_050 0.1698009885 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
18 Hb_000915_130 0.1699474079 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
19 Hb_000069_300 0.1716076652 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
20 Hb_003667_020 0.1741448998 - - conserved hypothetical protein 16 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000030_020 Hb_000030_020 Hb_002026_020 Hb_002026_020 Hb_000030_020--Hb_002026_020 Hb_012286_060 Hb_012286_060 Hb_000030_020--Hb_012286_060 Hb_000165_090 Hb_000165_090 Hb_000030_020--Hb_000165_090 Hb_005348_150 Hb_005348_150 Hb_000030_020--Hb_005348_150 Hb_000599_330 Hb_000599_330 Hb_000030_020--Hb_000599_330 Hb_005245_140 Hb_005245_140 Hb_000030_020--Hb_005245_140 Hb_001328_050 Hb_001328_050 Hb_002026_020--Hb_001328_050 Hb_006829_070 Hb_006829_070 Hb_002026_020--Hb_006829_070 Hb_012762_060 Hb_012762_060 Hb_002026_020--Hb_012762_060 Hb_002900_150 Hb_002900_150 Hb_002026_020--Hb_002900_150 Hb_003680_030 Hb_003680_030 Hb_002026_020--Hb_003680_030 Hb_000963_050 Hb_000963_050 Hb_012286_060--Hb_000963_050 Hb_012286_060--Hb_005348_150 Hb_008511_040 Hb_008511_040 Hb_012286_060--Hb_008511_040 Hb_118939_010 Hb_118939_010 Hb_012286_060--Hb_118939_010 Hb_143629_120 Hb_143629_120 Hb_012286_060--Hb_143629_120 Hb_000165_090--Hb_005245_140 Hb_000069_300 Hb_000069_300 Hb_000165_090--Hb_000069_300 Hb_003667_020 Hb_003667_020 Hb_000165_090--Hb_003667_020 Hb_000165_090--Hb_008511_040 Hb_001862_030 Hb_001862_030 Hb_000165_090--Hb_001862_030 Hb_005348_150--Hb_118939_010 Hb_119583_020 Hb_119583_020 Hb_005348_150--Hb_119583_020 Hb_005348_150--Hb_000599_330 Hb_000388_080 Hb_000388_080 Hb_005348_150--Hb_000388_080 Hb_000599_330--Hb_143629_120 Hb_000599_330--Hb_000963_050 Hb_000599_330--Hb_012286_060 Hb_003029_120 Hb_003029_120 Hb_000599_330--Hb_003029_120 Hb_000011_070 Hb_000011_070 Hb_000599_330--Hb_000011_070 Hb_091318_010 Hb_091318_010 Hb_005245_140--Hb_091318_010 Hb_004678_030 Hb_004678_030 Hb_005245_140--Hb_004678_030 Hb_010315_100 Hb_010315_100 Hb_005245_140--Hb_010315_100 Hb_002110_170 Hb_002110_170 Hb_005245_140--Hb_002110_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6447 149.4 292.055 373.604 24.5175 36.7771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.837 23.3843 5.08226 9.43338 125.422

CAGE analysis