Hb_000165_090

Information

Type -
Description -
Location Contig165: 98224-99877
Sequence    

Annotation

kegg
ID rcu:RCOM_0687260
description hypothetical protein
nr
ID XP_012090597.1
description PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 2-like [Jatropha curcas]
swissprot
ID Q8L7E9
description Protein MID1-COMPLEMENTING ACTIVITY 1 OS=Arabidopsis thaliana GN=MCA1 PE=1 SV=1
trembl
ID B9S458
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0687260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000165_090 0.0 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 2-like [Jatropha curcas]
2 Hb_005245_140 0.1040062035 - - PREDICTED: ribonuclease 2 [Jatropha curcas]
3 Hb_000030_020 0.1150937644 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
4 Hb_000069_300 0.1253951715 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
5 Hb_003667_020 0.1346272809 - - conserved hypothetical protein 16 [Hevea brasiliensis]
6 Hb_008511_040 0.1370307071 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
7 Hb_001862_030 0.1387267694 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
8 Hb_091318_010 0.1397798955 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
9 Hb_002463_050 0.1412043364 - - conserved hypothetical protein [Ricinus communis]
10 Hb_143629_120 0.1464506678 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
11 Hb_000836_090 0.1474857153 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
12 Hb_001541_190 0.1475415693 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
13 Hb_000243_060 0.1496912787 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
14 Hb_000465_020 0.1501875855 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
15 Hb_001862_050 0.1526844132 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
16 Hb_001221_060 0.153032378 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
17 Hb_000008_200 0.153183026 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
18 Hb_000062_130 0.1568929925 - - cytochrome P450, putative [Ricinus communis]
19 Hb_004678_030 0.1569429896 - - fructokinase [Manihot esculenta]
20 Hb_001307_020 0.1571492028 - - electron carrier, putative [Ricinus communis]

Gene co-expression network

sample Hb_000165_090 Hb_000165_090 Hb_005245_140 Hb_005245_140 Hb_000165_090--Hb_005245_140 Hb_000030_020 Hb_000030_020 Hb_000165_090--Hb_000030_020 Hb_000069_300 Hb_000069_300 Hb_000165_090--Hb_000069_300 Hb_003667_020 Hb_003667_020 Hb_000165_090--Hb_003667_020 Hb_008511_040 Hb_008511_040 Hb_000165_090--Hb_008511_040 Hb_001862_030 Hb_001862_030 Hb_000165_090--Hb_001862_030 Hb_091318_010 Hb_091318_010 Hb_005245_140--Hb_091318_010 Hb_004678_030 Hb_004678_030 Hb_005245_140--Hb_004678_030 Hb_005245_140--Hb_000030_020 Hb_010315_100 Hb_010315_100 Hb_005245_140--Hb_010315_100 Hb_002110_170 Hb_002110_170 Hb_005245_140--Hb_002110_170 Hb_002026_020 Hb_002026_020 Hb_000030_020--Hb_002026_020 Hb_012286_060 Hb_012286_060 Hb_000030_020--Hb_012286_060 Hb_005348_150 Hb_005348_150 Hb_000030_020--Hb_005348_150 Hb_000599_330 Hb_000599_330 Hb_000030_020--Hb_000599_330 Hb_001541_190 Hb_001541_190 Hb_000069_300--Hb_001541_190 Hb_000069_300--Hb_008511_040 Hb_001862_050 Hb_001862_050 Hb_000069_300--Hb_001862_050 Hb_006133_020 Hb_006133_020 Hb_000069_300--Hb_006133_020 Hb_001141_050 Hb_001141_050 Hb_000069_300--Hb_001141_050 Hb_001922_110 Hb_001922_110 Hb_000069_300--Hb_001922_110 Hb_003667_020--Hb_001862_030 Hb_003667_020--Hb_001541_190 Hb_003667_020--Hb_001862_050 Hb_003667_020--Hb_000069_300 Hb_000260_610 Hb_000260_610 Hb_003667_020--Hb_000260_610 Hb_008511_040--Hb_006133_020 Hb_000008_200 Hb_000008_200 Hb_008511_040--Hb_000008_200 Hb_000227_400 Hb_000227_400 Hb_008511_040--Hb_000227_400 Hb_008511_040--Hb_001922_110 Hb_001123_310 Hb_001123_310 Hb_008511_040--Hb_001123_310 Hb_002463_050 Hb_002463_050 Hb_001862_030--Hb_002463_050 Hb_000809_130 Hb_000809_130 Hb_001862_030--Hb_000809_130 Hb_001862_030--Hb_001541_190 Hb_001307_020 Hb_001307_020 Hb_001862_030--Hb_001307_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.067541 0.66795 1.65449 1.32555 0.0757342 0.102911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0618447 0.097265 0 0.11785 0.589453

CAGE analysis