Hb_015941_010

Information

Type -
Description -
Location Contig15941: 8471-9940
Sequence    

Annotation

kegg
ID mdm:103454565
description putative UPF0481 protein At3g02645
nr
ID XP_012085983.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID A0A067JTY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22474 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015941_010 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_143629_120 0.118987932 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
3 Hb_001775_080 0.1255124348 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
4 Hb_000749_290 0.1285655083 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
5 Hb_002078_390 0.1339892696 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
6 Hb_005784_010 0.1371724961 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
7 Hb_001951_080 0.1442790402 - - O-acetyltransferase, putative [Ricinus communis]
8 Hb_000922_400 0.1467237191 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
9 Hb_006569_080 0.1473331988 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_024559 [Vitis vinifera]
10 Hb_004223_060 0.147563868 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
11 Hb_003050_020 0.1480416911 - - glycosyl hydrolase family 17 family protein [Populus trichocarpa]
12 Hb_001159_230 0.1481755483 - - Kinesin heavy chain, putative [Ricinus communis]
13 Hb_000417_050 0.1499928034 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
14 Hb_004450_020 0.1502554813 - - serine-threonine protein kinase, putative [Ricinus communis]
15 Hb_000342_040 0.1502623137 - - pollen specific protein sf21, putative [Ricinus communis]
16 Hb_004117_090 0.1504156204 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
17 Hb_005568_020 0.1513596321 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
18 Hb_000008_200 0.1515607495 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
19 Hb_000077_280 0.1525662905 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_007904_280 0.1528261595 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]

Gene co-expression network

sample Hb_015941_010 Hb_015941_010 Hb_143629_120 Hb_143629_120 Hb_015941_010--Hb_143629_120 Hb_001775_080 Hb_001775_080 Hb_015941_010--Hb_001775_080 Hb_000749_290 Hb_000749_290 Hb_015941_010--Hb_000749_290 Hb_002078_390 Hb_002078_390 Hb_015941_010--Hb_002078_390 Hb_005784_010 Hb_005784_010 Hb_015941_010--Hb_005784_010 Hb_001951_080 Hb_001951_080 Hb_015941_010--Hb_001951_080 Hb_008686_010 Hb_008686_010 Hb_143629_120--Hb_008686_010 Hb_001195_550 Hb_001195_550 Hb_143629_120--Hb_001195_550 Hb_000599_330 Hb_000599_330 Hb_143629_120--Hb_000599_330 Hb_169893_010 Hb_169893_010 Hb_143629_120--Hb_169893_010 Hb_012286_060 Hb_012286_060 Hb_143629_120--Hb_012286_060 Hb_006569_080 Hb_006569_080 Hb_001775_080--Hb_006569_080 Hb_019516_060 Hb_019516_060 Hb_001775_080--Hb_019516_060 Hb_000069_560 Hb_000069_560 Hb_001775_080--Hb_000069_560 Hb_000922_400 Hb_000922_400 Hb_001775_080--Hb_000922_400 Hb_005305_040 Hb_005305_040 Hb_001775_080--Hb_005305_040 Hb_000077_280 Hb_000077_280 Hb_000749_290--Hb_000077_280 Hb_039946_060 Hb_039946_060 Hb_000749_290--Hb_039946_060 Hb_011574_020 Hb_011574_020 Hb_000749_290--Hb_011574_020 Hb_024714_110 Hb_024714_110 Hb_000749_290--Hb_024714_110 Hb_008895_020 Hb_008895_020 Hb_000749_290--Hb_008895_020 Hb_000193_180 Hb_000193_180 Hb_000749_290--Hb_000193_180 Hb_005568_020 Hb_005568_020 Hb_002078_390--Hb_005568_020 Hb_000465_020 Hb_000465_020 Hb_002078_390--Hb_000465_020 Hb_028008_040 Hb_028008_040 Hb_002078_390--Hb_028008_040 Hb_000243_060 Hb_000243_060 Hb_002078_390--Hb_000243_060 Hb_000417_050 Hb_000417_050 Hb_002078_390--Hb_000417_050 Hb_002311_280 Hb_002311_280 Hb_002078_390--Hb_002311_280 Hb_000345_550 Hb_000345_550 Hb_005784_010--Hb_000345_550 Hb_005784_010--Hb_001951_080 Hb_007904_280 Hb_007904_280 Hb_005784_010--Hb_007904_280 Hb_004223_060 Hb_004223_060 Hb_005784_010--Hb_004223_060 Hb_001819_020 Hb_001819_020 Hb_005784_010--Hb_001819_020 Hb_009783_010 Hb_009783_010 Hb_005784_010--Hb_009783_010 Hb_012484_050 Hb_012484_050 Hb_001951_080--Hb_012484_050 Hb_001951_080--Hb_000345_550 Hb_001486_280 Hb_001486_280 Hb_001951_080--Hb_001486_280 Hb_003097_160 Hb_003097_160 Hb_001951_080--Hb_003097_160 Hb_003125_210 Hb_003125_210 Hb_001951_080--Hb_003125_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.143701 0.91177 3.36687 5.59182 0.136893 0.153051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.25572 0.251475 0 0.200814 2.8385

CAGE analysis