Hb_000749_290

Information

Type -
Description -
Location Contig749: 288415-290589
Sequence    

Annotation

kegg
ID rcu:RCOM_0163950
description hypothetical protein
nr
ID XP_012084918.1
description PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JW17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20958 PE=4 SV=1
Gene Ontology
ID GO:0010413
description fiber protein fb34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56811: 288468-290660
cDNA
(Sanger)
(ID:Location)		 043_F20.ab1: 288771-290614 , 045_H09.ab1: 288832-290660

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_290 0.0 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
2 Hb_000077_280 0.1096847206 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_039946_060 0.1124586517 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
4 Hb_011574_020 0.1171694599 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
5 Hb_024714_110 0.1211674351 - - PREDICTED: translocator protein homolog [Jatropha curcas]
6 Hb_008895_020 0.1217756312 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
7 Hb_000193_180 0.1222153089 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
8 Hb_000012_350 0.1238433642 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
9 Hb_096027_010 0.1259357529 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_011853_020 0.1259857563 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
11 Hb_059275_010 0.126619034 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
12 Hb_004450_020 0.1272036686 - - serine-threonine protein kinase, putative [Ricinus communis]
13 Hb_020738_010 0.1278859785 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
14 Hb_015941_010 0.1285655083 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
15 Hb_001638_340 0.1321768468 - - conserved hypothetical protein [Ricinus communis]
16 Hb_029977_030 0.1335211572 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
17 Hb_000680_060 0.1342889445 - - hypothetical protein POPTR_0001s20790g [Populus trichocarpa]
18 Hb_003054_070 0.1351364759 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
19 Hb_001794_040 0.137584874 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
20 Hb_004223_060 0.1383043907 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]

Gene co-expression network

sample Hb_000749_290 Hb_000749_290 Hb_000077_280 Hb_000077_280 Hb_000749_290--Hb_000077_280 Hb_039946_060 Hb_039946_060 Hb_000749_290--Hb_039946_060 Hb_011574_020 Hb_011574_020 Hb_000749_290--Hb_011574_020 Hb_024714_110 Hb_024714_110 Hb_000749_290--Hb_024714_110 Hb_008895_020 Hb_008895_020 Hb_000749_290--Hb_008895_020 Hb_000193_180 Hb_000193_180 Hb_000749_290--Hb_000193_180 Hb_017383_010 Hb_017383_010 Hb_000077_280--Hb_017383_010 Hb_004223_060 Hb_004223_060 Hb_000077_280--Hb_004223_060 Hb_020738_010 Hb_020738_010 Hb_000077_280--Hb_020738_010 Hb_000032_420 Hb_000032_420 Hb_000077_280--Hb_000032_420 Hb_007904_280 Hb_007904_280 Hb_000077_280--Hb_007904_280 Hb_000103_220 Hb_000103_220 Hb_000077_280--Hb_000103_220 Hb_001427_100 Hb_001427_100 Hb_039946_060--Hb_001427_100 Hb_005741_030 Hb_005741_030 Hb_039946_060--Hb_005741_030 Hb_001405_170 Hb_001405_170 Hb_039946_060--Hb_001405_170 Hb_000020_210 Hb_000020_210 Hb_039946_060--Hb_000020_210 Hb_000012_350 Hb_000012_350 Hb_039946_060--Hb_000012_350 Hb_003054_070 Hb_003054_070 Hb_039946_060--Hb_003054_070 Hb_011574_020--Hb_020738_010 Hb_001638_340 Hb_001638_340 Hb_011574_020--Hb_001638_340 Hb_059275_010 Hb_059275_010 Hb_011574_020--Hb_059275_010 Hb_011574_020--Hb_000012_350 Hb_011574_020--Hb_008895_020 Hb_001794_040 Hb_001794_040 Hb_011574_020--Hb_001794_040 Hb_024714_110--Hb_008895_020 Hb_001715_060 Hb_001715_060 Hb_024714_110--Hb_001715_060 Hb_029977_030 Hb_029977_030 Hb_024714_110--Hb_029977_030 Hb_006651_030 Hb_006651_030 Hb_024714_110--Hb_006651_030 Hb_004450_020 Hb_004450_020 Hb_024714_110--Hb_004450_020 Hb_008895_020--Hb_001638_340 Hb_008895_020--Hb_006651_030 Hb_008895_020--Hb_029977_030 Hb_124677_090 Hb_124677_090 Hb_008895_020--Hb_124677_090 Hb_001477_060 Hb_001477_060 Hb_008895_020--Hb_001477_060 Hb_008895_020--Hb_059275_010 Hb_001766_130 Hb_001766_130 Hb_000193_180--Hb_001766_130 Hb_003893_130 Hb_003893_130 Hb_000193_180--Hb_003893_130 Hb_096027_010 Hb_096027_010 Hb_000193_180--Hb_096027_010 Hb_005675_070 Hb_005675_070 Hb_000193_180--Hb_005675_070 Hb_000193_180--Hb_039946_060 Hb_161103_010 Hb_161103_010 Hb_000193_180--Hb_161103_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.83014 91.0412 252.483 448.386 1.51894 0.736537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2259 11.2345 1.04928 2.35825 194.568

CAGE analysis