Hb_002267_060

Information

Type transcription factor
Description TF Family: ERF
Location Contig2267: 63072-63629
Sequence    

Annotation

kegg
ID rcu:RCOM_1491630
description Transcriptional factor TINY, putative
nr
ID XP_012073419.1
description PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
swissprot
ID Q9LYD3
description Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1
trembl
ID A0A067KQN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06329 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor tiny-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002267_060 0.0 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
2 Hb_000321_170 0.0752667034 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
3 Hb_000120_930 0.1113560232 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
4 Hb_002045_210 0.1190202377 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
5 Hb_028487_060 0.1223717681 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
6 Hb_003086_160 0.1359631505 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
7 Hb_000022_080 0.1362248435 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
8 Hb_033720_030 0.1412024723 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
9 Hb_005496_040 0.1427583197 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
10 Hb_005890_020 0.1432544139 - - putative plant disease resistance family protein [Populus trichocarpa]
11 Hb_000261_070 0.1470277393 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
12 Hb_000003_610 0.1543713184 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Jatropha curcas]
13 Hb_001186_100 0.1551796502 - - PREDICTED: uncharacterized protein LOC105640806 isoform X1 [Jatropha curcas]
14 Hb_000963_050 0.1572903472 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
15 Hb_000342_040 0.1649388262 - - pollen specific protein sf21, putative [Ricinus communis]
16 Hb_008686_010 0.1659184157 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001195_550 0.1661943432 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
18 Hb_003750_120 0.1668786029 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
19 Hb_143629_120 0.1673613611 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
20 Hb_001056_040 0.1689560998 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]

Gene co-expression network

sample Hb_002267_060 Hb_002267_060 Hb_000321_170 Hb_000321_170 Hb_002267_060--Hb_000321_170 Hb_000120_930 Hb_000120_930 Hb_002267_060--Hb_000120_930 Hb_002045_210 Hb_002045_210 Hb_002267_060--Hb_002045_210 Hb_028487_060 Hb_028487_060 Hb_002267_060--Hb_028487_060 Hb_003086_160 Hb_003086_160 Hb_002267_060--Hb_003086_160 Hb_000022_080 Hb_000022_080 Hb_002267_060--Hb_000022_080 Hb_000321_170--Hb_002045_210 Hb_005496_040 Hb_005496_040 Hb_000321_170--Hb_005496_040 Hb_000321_170--Hb_000022_080 Hb_000321_170--Hb_000120_930 Hb_005890_020 Hb_005890_020 Hb_000321_170--Hb_005890_020 Hb_004254_060 Hb_004254_060 Hb_000120_930--Hb_004254_060 Hb_003750_090 Hb_003750_090 Hb_000120_930--Hb_003750_090 Hb_000120_930--Hb_002045_210 Hb_001431_090 Hb_001431_090 Hb_000120_930--Hb_001431_090 Hb_001056_040 Hb_001056_040 Hb_002045_210--Hb_001056_040 Hb_002045_210--Hb_005496_040 Hb_000342_040 Hb_000342_040 Hb_002045_210--Hb_000342_040 Hb_003750_120 Hb_003750_120 Hb_002045_210--Hb_003750_120 Hb_002045_210--Hb_000022_080 Hb_028487_060--Hb_000321_170 Hb_033720_030 Hb_033720_030 Hb_028487_060--Hb_033720_030 Hb_000261_070 Hb_000261_070 Hb_028487_060--Hb_000261_070 Hb_028487_060--Hb_000342_040 Hb_028487_060--Hb_005496_040 Hb_003086_160--Hb_033720_030 Hb_003086_160--Hb_000321_170 Hb_003086_160--Hb_000022_080 Hb_012286_060 Hb_012286_060 Hb_003086_160--Hb_012286_060 Hb_003086_160--Hb_028487_060 Hb_000022_080--Hb_005496_040 Hb_004195_070 Hb_004195_070 Hb_000022_080--Hb_004195_070 Hb_000441_130 Hb_000441_130 Hb_000022_080--Hb_000441_130 Hb_002818_060 Hb_002818_060 Hb_000022_080--Hb_002818_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96684 1.34738 14.0711 18.882 0.549067 0.380448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.912299 5.2477

CAGE analysis