Hb_001431_090

Information

Type transcription factor
Description TF Family: DBP
Location Contig1431: 91311-97300
Sequence    

Annotation

kegg
ID zma:100384116
description DBP1; putative protein phosphatase 2C family protein
nr
ID XP_010412723.1
description PREDICTED: probable protein phosphatase 2C 47, partial [Camelina sativa]
swissprot
ID Q6L5C4
description Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica GN=Os05g0587100 PE=2 SV=1
trembl
ID A0A022QYG9
description Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a018059mg PE=4 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 27 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11382: 93814-94114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001431_090 0.0 transcription factor TF Family: DBP PREDICTED: probable protein phosphatase 2C 47, partial [Camelina sativa]
2 Hb_000497_250 0.0880914464 - - PREDICTED: potassium transporter 5 [Jatropha curcas]
3 Hb_001514_030 0.1345541977 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
4 Hb_003894_170 0.1445608103 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]
5 Hb_000120_930 0.1466123388 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
6 Hb_016333_010 0.1503597862 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
7 Hb_168918_010 0.1504891512 - - pectin acetylesterase, putative [Ricinus communis]
8 Hb_004037_040 0.1532190753 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
9 Hb_004143_090 0.1542851882 - - PREDICTED: VIN3-like protein 2 isoform X1 [Jatropha curcas]
10 Hb_000189_180 0.1549506286 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
11 Hb_001958_010 0.1590403052 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
12 Hb_004254_060 0.1590625305 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
13 Hb_007617_010 0.1613190825 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
14 Hb_007632_070 0.1613229 - - kinase, putative [Ricinus communis]
15 Hb_007218_040 0.1628835614 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
16 Hb_000748_120 0.1653734805 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
17 Hb_004076_060 0.1657628502 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]
18 Hb_001053_170 0.1667062412 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
19 Hb_051663_010 0.1675179966 - - receptor-kinase, putative [Ricinus communis]
20 Hb_000676_360 0.1685098541 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]

Gene co-expression network

sample Hb_001431_090 Hb_001431_090 Hb_000497_250 Hb_000497_250 Hb_001431_090--Hb_000497_250 Hb_001514_030 Hb_001514_030 Hb_001431_090--Hb_001514_030 Hb_003894_170 Hb_003894_170 Hb_001431_090--Hb_003894_170 Hb_000120_930 Hb_000120_930 Hb_001431_090--Hb_000120_930 Hb_016333_010 Hb_016333_010 Hb_001431_090--Hb_016333_010 Hb_168918_010 Hb_168918_010 Hb_001431_090--Hb_168918_010 Hb_007617_010 Hb_007617_010 Hb_000497_250--Hb_007617_010 Hb_004143_090 Hb_004143_090 Hb_000497_250--Hb_004143_090 Hb_000497_250--Hb_001514_030 Hb_019516_010 Hb_019516_010 Hb_000497_250--Hb_019516_010 Hb_007922_030 Hb_007922_030 Hb_000497_250--Hb_007922_030 Hb_001514_030--Hb_168918_010 Hb_004037_040 Hb_004037_040 Hb_001514_030--Hb_004037_040 Hb_001079_060 Hb_001079_060 Hb_001514_030--Hb_001079_060 Hb_001516_010 Hb_001516_010 Hb_001514_030--Hb_001516_010 Hb_004122_010 Hb_004122_010 Hb_001514_030--Hb_004122_010 Hb_007218_040 Hb_007218_040 Hb_001514_030--Hb_007218_040 Hb_002301_120 Hb_002301_120 Hb_003894_170--Hb_002301_120 Hb_000109_140 Hb_000109_140 Hb_003894_170--Hb_000109_140 Hb_000189_180 Hb_000189_180 Hb_003894_170--Hb_000189_180 Hb_003894_170--Hb_001079_060 Hb_003894_170--Hb_004037_040 Hb_004076_060 Hb_004076_060 Hb_003894_170--Hb_004076_060 Hb_002267_060 Hb_002267_060 Hb_000120_930--Hb_002267_060 Hb_000321_170 Hb_000321_170 Hb_000120_930--Hb_000321_170 Hb_004254_060 Hb_004254_060 Hb_000120_930--Hb_004254_060 Hb_003750_090 Hb_003750_090 Hb_000120_930--Hb_003750_090 Hb_002045_210 Hb_002045_210 Hb_000120_930--Hb_002045_210 Hb_001863_330 Hb_001863_330 Hb_016333_010--Hb_001863_330 Hb_127839_010 Hb_127839_010 Hb_016333_010--Hb_127839_010 Hb_007632_070 Hb_007632_070 Hb_016333_010--Hb_007632_070 Hb_087992_010 Hb_087992_010 Hb_016333_010--Hb_087992_010 Hb_001958_010 Hb_001958_010 Hb_016333_010--Hb_001958_010 Hb_016333_010--Hb_004037_040 Hb_168918_010--Hb_007218_040 Hb_003666_070 Hb_003666_070 Hb_168918_010--Hb_003666_070 Hb_168918_010--Hb_004122_010 Hb_005976_110 Hb_005976_110 Hb_168918_010--Hb_005976_110 Hb_168918_010--Hb_004037_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.075818 0 0.910416 0.812337 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0843753 0.406023

CAGE analysis