Hb_087992_010

Information

Type -
Description -
Location Contig87992: 8194-8868
Sequence    

Annotation

kegg
ID rcu:RCOM_0964340
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002517775.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID B9RVK6
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_0964340 PE=4 SV=1
Gene Ontology
ID GO:0016491
description cinnamoyl- reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087992_010 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_002224_020 0.0685376047 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
3 Hb_127839_010 0.0753589381 - - hypothetical protein PRUPE_ppa000956mg [Prunus persica]
4 Hb_001863_330 0.076579937 - - RNA-binding region-containing protein, putative [Ricinus communis]
5 Hb_016333_010 0.0817777159 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
6 Hb_007632_070 0.0825847618 - - kinase, putative [Ricinus communis]
7 Hb_149882_010 0.0850854102 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
8 Hb_002740_140 0.0932438484 - - hypothetical protein L484_022679 [Morus notabilis]
9 Hb_003427_030 0.0940359305 - - -
10 Hb_000563_470 0.1025266645 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
11 Hb_001140_300 0.1047777194 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
12 Hb_000185_180 0.1093586953 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
13 Hb_001047_090 0.1099340296 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
14 Hb_010962_020 0.1231088632 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
15 Hb_000815_050 0.1269473982 - - PREDICTED: expansin-A1 [Populus euphratica]
16 Hb_007477_010 0.1277983223 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
17 Hb_000789_160 0.1296972484 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
18 Hb_050898_040 0.1297457349 - - -
19 Hb_006846_040 0.1302536116 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
20 Hb_058471_020 0.1315997892 - - PREDICTED: expansin-B3-like [Jatropha curcas]

Gene co-expression network

sample Hb_087992_010 Hb_087992_010 Hb_002224_020 Hb_002224_020 Hb_087992_010--Hb_002224_020 Hb_127839_010 Hb_127839_010 Hb_087992_010--Hb_127839_010 Hb_001863_330 Hb_001863_330 Hb_087992_010--Hb_001863_330 Hb_016333_010 Hb_016333_010 Hb_087992_010--Hb_016333_010 Hb_007632_070 Hb_007632_070 Hb_087992_010--Hb_007632_070 Hb_149882_010 Hb_149882_010 Hb_087992_010--Hb_149882_010 Hb_002224_020--Hb_149882_010 Hb_003427_030 Hb_003427_030 Hb_002224_020--Hb_003427_030 Hb_000185_180 Hb_000185_180 Hb_002224_020--Hb_000185_180 Hb_002224_020--Hb_001863_330 Hb_002224_020--Hb_127839_010 Hb_127839_010--Hb_016333_010 Hb_127839_010--Hb_007632_070 Hb_127839_010--Hb_149882_010 Hb_127839_010--Hb_001863_330 Hb_001863_330--Hb_016333_010 Hb_001863_330--Hb_007632_070 Hb_001863_330--Hb_000185_180 Hb_016333_010--Hb_007632_070 Hb_001958_010 Hb_001958_010 Hb_016333_010--Hb_001958_010 Hb_004037_040 Hb_004037_040 Hb_016333_010--Hb_004037_040 Hb_000563_470 Hb_000563_470 Hb_007632_070--Hb_000563_470 Hb_001140_300 Hb_001140_300 Hb_007632_070--Hb_001140_300 Hb_149882_010--Hb_003427_030 Hb_149882_010--Hb_000563_470 Hb_149882_010--Hb_000185_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.41493 0.868066 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0685189 0.279533

CAGE analysis