Hb_000185_180

Information

Type -
Description -
Location Contig185: 235591-236414
Sequence    

Annotation

kegg
ID egr:104448604
description protein trichome birefringence-like 43
nr
ID KDO42384.1
description hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DHB7
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g037968mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_180 0.0 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
2 Hb_007477_010 0.0379944724 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
3 Hb_003427_030 0.0623284932 - - -
4 Hb_002224_020 0.0701446465 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
5 Hb_001863_330 0.0873678025 - - RNA-binding region-containing protein, putative [Ricinus communis]
6 Hb_000815_010 0.1011474102 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
7 Hb_174639_010 0.1017860548 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_001141_270 0.102493736 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
9 Hb_149882_010 0.1057892091 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
10 Hb_087992_010 0.1093586953 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_004933_010 0.1173960398 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
12 Hb_000109_200 0.1190106818 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
13 Hb_007317_050 0.1197761383 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
14 Hb_001856_210 0.1206739728 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
15 Hb_001635_140 0.1212890374 - - protein with unknown function [Ricinus communis]
16 Hb_000563_470 0.123089925 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
17 Hb_000020_170 0.1298182076 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
18 Hb_005353_010 0.1298289078 - - Pectinesterase-1 precursor, putative [Ricinus communis]
19 Hb_050898_040 0.130371004 - - -
20 Hb_001709_120 0.1308493742 - - hypothetical protein RCOM_1313640 [Ricinus communis]

Gene co-expression network

sample Hb_000185_180 Hb_000185_180 Hb_007477_010 Hb_007477_010 Hb_000185_180--Hb_007477_010 Hb_003427_030 Hb_003427_030 Hb_000185_180--Hb_003427_030 Hb_002224_020 Hb_002224_020 Hb_000185_180--Hb_002224_020 Hb_001863_330 Hb_001863_330 Hb_000185_180--Hb_001863_330 Hb_000815_010 Hb_000815_010 Hb_000185_180--Hb_000815_010 Hb_174639_010 Hb_174639_010 Hb_000185_180--Hb_174639_010 Hb_007477_010--Hb_003427_030 Hb_007477_010--Hb_000815_010 Hb_001141_270 Hb_001141_270 Hb_007477_010--Hb_001141_270 Hb_007477_010--Hb_002224_020 Hb_007317_050 Hb_007317_050 Hb_007477_010--Hb_007317_050 Hb_003427_030--Hb_002224_020 Hb_149882_010 Hb_149882_010 Hb_003427_030--Hb_149882_010 Hb_087992_010 Hb_087992_010 Hb_003427_030--Hb_087992_010 Hb_000789_160 Hb_000789_160 Hb_003427_030--Hb_000789_160 Hb_002224_020--Hb_149882_010 Hb_002224_020--Hb_087992_010 Hb_002224_020--Hb_001863_330 Hb_127839_010 Hb_127839_010 Hb_002224_020--Hb_127839_010 Hb_016333_010 Hb_016333_010 Hb_001863_330--Hb_016333_010 Hb_001863_330--Hb_087992_010 Hb_001863_330--Hb_127839_010 Hb_007632_070 Hb_007632_070 Hb_001863_330--Hb_007632_070 Hb_000815_010--Hb_001141_270 Hb_005666_010 Hb_005666_010 Hb_000815_010--Hb_005666_010 Hb_002999_020 Hb_002999_020 Hb_000815_010--Hb_002999_020 Hb_000742_040 Hb_000742_040 Hb_000815_010--Hb_000742_040 Hb_016734_110 Hb_016734_110 Hb_000815_010--Hb_016734_110 Hb_001007_020 Hb_001007_020 Hb_174639_010--Hb_001007_020 Hb_001856_210 Hb_001856_210 Hb_174639_010--Hb_001856_210 Hb_001709_120 Hb_001709_120 Hb_174639_010--Hb_001709_120 Hb_001056_040 Hb_001056_040 Hb_174639_010--Hb_001056_040 Hb_174639_010--Hb_001863_330 Hb_000320_010 Hb_000320_010 Hb_174639_010--Hb_000320_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.32577 2.63379 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.120089 0.414522

CAGE analysis