Hb_000815_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig815: 22634-24343
Sequence    

Annotation

kegg
ID pop:POPTR_0010s17470g
description POPTRDRAFT_567031; hypothetical protein
nr
ID XP_011013264.1
description PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID B9HXZ2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s17470g PE=4 SV=2
Gene Ontology
ID GO:0005488
description transcription factor myb44 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_010 0.0 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
2 Hb_001141_270 0.0472375798 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
3 Hb_007477_010 0.0715164479 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
4 Hb_005666_010 0.074255521 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
5 Hb_002999_020 0.0856330442 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
6 Hb_000742_040 0.0859891866 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
7 Hb_016734_110 0.0951967627 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
8 Hb_124677_070 0.100115938 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
9 Hb_000185_180 0.1011474102 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
10 Hb_153258_030 0.1017193326 - - hypothetical protein RCOM_0853150 [Ricinus communis]
11 Hb_000666_040 0.1025195314 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
12 Hb_009662_040 0.1050948872 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
13 Hb_007317_050 0.1065294972 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
14 Hb_000802_040 0.1137655542 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
15 Hb_001568_040 0.1163169993 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003427_030 0.1186520803 - - -
17 Hb_004933_010 0.118726234 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
18 Hb_000796_110 0.1213640504 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
19 Hb_188742_010 0.124076517 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
20 Hb_012675_010 0.1246515421 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000815_010 Hb_000815_010 Hb_001141_270 Hb_001141_270 Hb_000815_010--Hb_001141_270 Hb_007477_010 Hb_007477_010 Hb_000815_010--Hb_007477_010 Hb_005666_010 Hb_005666_010 Hb_000815_010--Hb_005666_010 Hb_002999_020 Hb_002999_020 Hb_000815_010--Hb_002999_020 Hb_000742_040 Hb_000742_040 Hb_000815_010--Hb_000742_040 Hb_016734_110 Hb_016734_110 Hb_000815_010--Hb_016734_110 Hb_001141_270--Hb_007477_010 Hb_001141_270--Hb_005666_010 Hb_000185_180 Hb_000185_180 Hb_001141_270--Hb_000185_180 Hb_001141_270--Hb_002999_020 Hb_001141_270--Hb_000742_040 Hb_007477_010--Hb_000185_180 Hb_003427_030 Hb_003427_030 Hb_007477_010--Hb_003427_030 Hb_002224_020 Hb_002224_020 Hb_007477_010--Hb_002224_020 Hb_007317_050 Hb_007317_050 Hb_007477_010--Hb_007317_050 Hb_005666_010--Hb_000742_040 Hb_005666_010--Hb_007317_050 Hb_164853_010 Hb_164853_010 Hb_005666_010--Hb_164853_010 Hb_012675_010 Hb_012675_010 Hb_005666_010--Hb_012675_010 Hb_005666_010--Hb_016734_110 Hb_153258_030 Hb_153258_030 Hb_002999_020--Hb_153258_030 Hb_002999_020--Hb_000742_040 Hb_000796_110 Hb_000796_110 Hb_002999_020--Hb_000796_110 Hb_001416_120 Hb_001416_120 Hb_002999_020--Hb_001416_120 Hb_124677_070 Hb_124677_070 Hb_002999_020--Hb_124677_070 Hb_002999_020--Hb_016734_110 Hb_000742_040--Hb_124677_070 Hb_000742_040--Hb_000796_110 Hb_000742_040--Hb_016734_110 Hb_000742_040--Hb_153258_030 Hb_000802_040 Hb_000802_040 Hb_000742_040--Hb_000802_040 Hb_000666_040 Hb_000666_040 Hb_016734_110--Hb_000666_040 Hb_001568_040 Hb_001568_040 Hb_016734_110--Hb_001568_040 Hb_016734_110--Hb_153258_030 Hb_001496_150 Hb_001496_150 Hb_016734_110--Hb_001496_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.263999 0.700804 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0104131 0.0544161

CAGE analysis