Hb_002224_020

Information

Type -
Description -
Location Contig2224: 10101-11427
Sequence    

Annotation

kegg
ID rcu:RCOM_1212390
description Xylem serine proteinase 1 precursor, putative (EC:1.3.1.74)
nr
ID XP_012083905.1
description PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
swissprot
ID Q9ZSP5
description Subtilisin-like protease SBT5.3 OS=Arabidopsis thaliana GN=AIR3 PE=2 SV=1
trembl
ID A0A067LLC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15019 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23023: 10451-10595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002224_020 0.0 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
2 Hb_149882_010 0.0388694516 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
3 Hb_003427_030 0.0592603954 - - -
4 Hb_087992_010 0.0685376047 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_000185_180 0.0701446465 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
6 Hb_001863_330 0.0821107226 - - RNA-binding region-containing protein, putative [Ricinus communis]
7 Hb_127839_010 0.0841860053 - - hypothetical protein PRUPE_ppa000956mg [Prunus persica]
8 Hb_000563_470 0.0925013529 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
9 Hb_007477_010 0.0995265738 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
10 Hb_007632_070 0.1012753986 - - kinase, putative [Ricinus communis]
11 Hb_016333_010 0.1114544582 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
12 Hb_001140_300 0.1117115685 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
13 Hb_174639_010 0.1251116808 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000853_250 0.1291089604 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
15 Hb_000789_160 0.1293554525 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
16 Hb_025787_020 0.1333253793 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
17 Hb_001635_140 0.1346493017 - - protein with unknown function [Ricinus communis]
18 Hb_002902_060 0.1397335551 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
19 Hb_001056_040 0.1414441914 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
20 Hb_001047_090 0.1435277683 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]

Gene co-expression network

sample Hb_002224_020 Hb_002224_020 Hb_149882_010 Hb_149882_010 Hb_002224_020--Hb_149882_010 Hb_003427_030 Hb_003427_030 Hb_002224_020--Hb_003427_030 Hb_087992_010 Hb_087992_010 Hb_002224_020--Hb_087992_010 Hb_000185_180 Hb_000185_180 Hb_002224_020--Hb_000185_180 Hb_001863_330 Hb_001863_330 Hb_002224_020--Hb_001863_330 Hb_127839_010 Hb_127839_010 Hb_002224_020--Hb_127839_010 Hb_149882_010--Hb_127839_010 Hb_149882_010--Hb_087992_010 Hb_149882_010--Hb_003427_030 Hb_000563_470 Hb_000563_470 Hb_149882_010--Hb_000563_470 Hb_149882_010--Hb_000185_180 Hb_003427_030--Hb_000185_180 Hb_007477_010 Hb_007477_010 Hb_003427_030--Hb_007477_010 Hb_003427_030--Hb_087992_010 Hb_000789_160 Hb_000789_160 Hb_003427_030--Hb_000789_160 Hb_087992_010--Hb_127839_010 Hb_087992_010--Hb_001863_330 Hb_016333_010 Hb_016333_010 Hb_087992_010--Hb_016333_010 Hb_007632_070 Hb_007632_070 Hb_087992_010--Hb_007632_070 Hb_000185_180--Hb_007477_010 Hb_000185_180--Hb_001863_330 Hb_000815_010 Hb_000815_010 Hb_000185_180--Hb_000815_010 Hb_174639_010 Hb_174639_010 Hb_000185_180--Hb_174639_010 Hb_001863_330--Hb_016333_010 Hb_001863_330--Hb_127839_010 Hb_001863_330--Hb_007632_070 Hb_127839_010--Hb_016333_010 Hb_127839_010--Hb_007632_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.525208 1.05722 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.102192 0.223041

CAGE analysis