Hb_004143_090

Information

Type -
Description -
Location Contig4143: 75317-77658
Sequence    

Annotation

kegg
ID rcu:RCOM_1039640
description Protein VERNALIZATION-INSENSITIVE, putative
nr
ID XP_012068026.1
description PREDICTED: VIN3-like protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9FIE3
description Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=1 SV=2
trembl
ID A0A067LBJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15896 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41036: 75041-77794 , PASA_asmbl_41037: 76405-76964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004143_090 0.0 - - PREDICTED: VIN3-like protein 2 isoform X1 [Jatropha curcas]
2 Hb_004453_160 0.0974197004 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004410_020 0.1025012508 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
4 Hb_000497_250 0.1033347424 - - PREDICTED: potassium transporter 5 [Jatropha curcas]
5 Hb_019516_010 0.1101387276 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
6 Hb_000375_220 0.1102185743 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
7 Hb_004007_050 0.1106190792 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
8 Hb_000073_040 0.1145793244 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
9 Hb_000397_060 0.1167172077 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
10 Hb_001958_040 0.1178893079 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
11 Hb_000847_090 0.1181991724 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
12 Hb_006614_020 0.11991857 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
13 Hb_003085_070 0.1204456141 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
14 Hb_007221_020 0.1206613468 - - FAD-binding domain-containing family protein [Populus trichocarpa]
15 Hb_001623_250 0.1214072767 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
16 Hb_000139_040 0.1226823984 - - spermine synthase, putative [Ricinus communis]
17 Hb_003006_070 0.1227215956 - - aquaporin [Manihot esculenta]
18 Hb_004128_150 0.1228828798 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
19 Hb_000331_170 0.1234943131 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
20 Hb_000840_080 0.1246725233 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_004143_090 Hb_004143_090 Hb_004453_160 Hb_004453_160 Hb_004143_090--Hb_004453_160 Hb_004410_020 Hb_004410_020 Hb_004143_090--Hb_004410_020 Hb_000497_250 Hb_000497_250 Hb_004143_090--Hb_000497_250 Hb_019516_010 Hb_019516_010 Hb_004143_090--Hb_019516_010 Hb_000375_220 Hb_000375_220 Hb_004143_090--Hb_000375_220 Hb_004007_050 Hb_004007_050 Hb_004143_090--Hb_004007_050 Hb_004453_160--Hb_004007_050 Hb_007221_020 Hb_007221_020 Hb_004453_160--Hb_007221_020 Hb_132840_190 Hb_132840_190 Hb_004453_160--Hb_132840_190 Hb_000031_240 Hb_000031_240 Hb_004453_160--Hb_000031_240 Hb_004128_150 Hb_004128_150 Hb_004453_160--Hb_004128_150 Hb_002307_140 Hb_002307_140 Hb_004453_160--Hb_002307_140 Hb_000373_020 Hb_000373_020 Hb_004410_020--Hb_000373_020 Hb_003006_070 Hb_003006_070 Hb_004410_020--Hb_003006_070 Hb_003085_070 Hb_003085_070 Hb_004410_020--Hb_003085_070 Hb_001623_250 Hb_001623_250 Hb_004410_020--Hb_001623_250 Hb_002836_110 Hb_002836_110 Hb_004410_020--Hb_002836_110 Hb_004410_020--Hb_000375_220 Hb_001431_090 Hb_001431_090 Hb_000497_250--Hb_001431_090 Hb_007617_010 Hb_007617_010 Hb_000497_250--Hb_007617_010 Hb_001514_030 Hb_001514_030 Hb_000497_250--Hb_001514_030 Hb_000497_250--Hb_019516_010 Hb_007922_030 Hb_007922_030 Hb_000497_250--Hb_007922_030 Hb_019516_010--Hb_007221_020 Hb_000134_130 Hb_000134_130 Hb_019516_010--Hb_000134_130 Hb_002894_060 Hb_002894_060 Hb_019516_010--Hb_002894_060 Hb_031321_020 Hb_031321_020 Hb_019516_010--Hb_031321_020 Hb_001958_040 Hb_001958_040 Hb_019516_010--Hb_001958_040 Hb_019516_010--Hb_004007_050 Hb_002030_010 Hb_002030_010 Hb_000375_220--Hb_002030_010 Hb_000127_240 Hb_000127_240 Hb_000375_220--Hb_000127_240 Hb_006614_020 Hb_006614_020 Hb_000375_220--Hb_006614_020 Hb_000847_090 Hb_000847_090 Hb_000375_220--Hb_000847_090 Hb_000375_220--Hb_003006_070 Hb_009847_010 Hb_009847_010 Hb_000375_220--Hb_009847_010 Hb_004007_050--Hb_004128_150 Hb_004007_050--Hb_001958_040 Hb_023640_020 Hb_023640_020 Hb_004007_050--Hb_023640_020 Hb_004007_050--Hb_000031_240 Hb_011310_170 Hb_011310_170 Hb_004007_050--Hb_011310_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0241623 0.0120073 0.89354 0.634335 0.0113124 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00862213 0.272711

CAGE analysis