Hb_004410_020

Information

Type -
Description -
Location Contig4410: 18235-21633
Sequence    

Annotation

kegg
ID rcu:RCOM_1596580
description protein with unknown function (EC:3.1.3.16 1.3.1.74)
nr
ID XP_012071977.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
swissprot
ID C0LGS2
description Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=2 SV=1
trembl
ID A0A067KR17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04517 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at4g36180

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42657: 18712-19196 , PASA_asmbl_42658: 19404-20272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004410_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
2 Hb_000373_020 0.0876033414 - - PREDICTED: beta-adaptin-like protein A [Jatropha curcas]
3 Hb_003006_070 0.0903363672 - - aquaporin [Manihot esculenta]
4 Hb_003085_070 0.0953354525 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
5 Hb_001623_250 0.0992617648 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
6 Hb_002836_110 0.1017397502 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
7 Hb_000375_220 0.1023885177 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
8 Hb_004143_090 0.1025012508 - - PREDICTED: VIN3-like protein 2 isoform X1 [Jatropha curcas]
9 Hb_001349_050 0.105107187 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
10 Hb_006614_020 0.1062685375 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
11 Hb_000073_040 0.1096049503 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
12 Hb_004128_150 0.1104535711 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
13 Hb_001958_040 0.1159433373 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
14 Hb_002818_060 0.1187582109 - - zinc finger protein, putative [Ricinus communis]
15 Hb_004007_050 0.1188617134 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
16 Hb_002030_010 0.1193187245 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
17 Hb_019516_010 0.1199269799 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
18 Hb_000127_240 0.1201732806 - - SAUR39 [Populus tomentosa]
19 Hb_007760_060 0.1250727258 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
20 Hb_002894_060 0.1255685812 - - respiratory burst oxidase D [Manihot esculenta]

Gene co-expression network

sample Hb_004410_020 Hb_004410_020 Hb_000373_020 Hb_000373_020 Hb_004410_020--Hb_000373_020 Hb_003006_070 Hb_003006_070 Hb_004410_020--Hb_003006_070 Hb_003085_070 Hb_003085_070 Hb_004410_020--Hb_003085_070 Hb_001623_250 Hb_001623_250 Hb_004410_020--Hb_001623_250 Hb_002836_110 Hb_002836_110 Hb_004410_020--Hb_002836_110 Hb_000375_220 Hb_000375_220 Hb_004410_020--Hb_000375_220 Hb_002894_060 Hb_002894_060 Hb_000373_020--Hb_002894_060 Hb_001007_020 Hb_001007_020 Hb_000373_020--Hb_001007_020 Hb_000373_020--Hb_002836_110 Hb_001349_050 Hb_001349_050 Hb_000373_020--Hb_001349_050 Hb_000320_010 Hb_000320_010 Hb_000373_020--Hb_000320_010 Hb_003006_070--Hb_001623_250 Hb_003006_070--Hb_003085_070 Hb_003006_070--Hb_000375_220 Hb_003006_070--Hb_002836_110 Hb_006614_020 Hb_006614_020 Hb_003006_070--Hb_006614_020 Hb_003006_070--Hb_001349_050 Hb_003085_070--Hb_001623_250 Hb_003185_040 Hb_003185_040 Hb_003085_070--Hb_003185_040 Hb_003085_070--Hb_002836_110 Hb_003085_070--Hb_006614_020 Hb_003085_070--Hb_000375_220 Hb_001623_250--Hb_001349_050 Hb_001623_250--Hb_002836_110 Hb_001623_250--Hb_002894_060 Hb_002818_060 Hb_002818_060 Hb_001623_250--Hb_002818_060 Hb_009113_020 Hb_009113_020 Hb_002836_110--Hb_009113_020 Hb_002836_110--Hb_001349_050 Hb_000538_290 Hb_000538_290 Hb_002836_110--Hb_000538_290 Hb_002030_010 Hb_002030_010 Hb_000375_220--Hb_002030_010 Hb_000127_240 Hb_000127_240 Hb_000375_220--Hb_000127_240 Hb_000375_220--Hb_006614_020 Hb_000847_090 Hb_000847_090 Hb_000375_220--Hb_000847_090 Hb_009847_010 Hb_009847_010 Hb_000375_220--Hb_009847_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0092236 0.692816 0.503334 0.0209862 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00792732 0.149675

CAGE analysis