Hb_000847_090

Information

Type -
Description -
Location Contig847: 127467-128643
Sequence    

Annotation

kegg
ID rcu:RCOM_1626710
description hypothetical protein
nr
ID XP_012084949.1
description PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LA51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15117 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60258: 126194-128768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000847_090 0.0 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
2 Hb_000556_060 0.0476493769 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
3 Hb_009847_010 0.0538984623 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
4 Hb_000375_220 0.0637540711 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
5 Hb_007044_240 0.0677501774 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
6 Hb_002307_140 0.0691271547 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
7 Hb_006711_030 0.0740437849 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
8 Hb_007218_050 0.0767527797 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000127_240 0.078632444 - - SAUR39 [Populus tomentosa]
10 Hb_000676_360 0.0791058333 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
11 Hb_007221_020 0.0794834003 - - FAD-binding domain-containing family protein [Populus trichocarpa]
12 Hb_132840_190 0.0804579917 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
13 Hb_024071_030 0.0848690306 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
14 Hb_180535_010 0.0882202623 - - -
15 Hb_000258_400 0.088710728 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
16 Hb_007922_030 0.088914544 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
17 Hb_019516_010 0.0912308311 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
18 Hb_002030_010 0.0923779254 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
19 Hb_007120_120 0.0940930441 - - protein binding protein, putative [Ricinus communis]
20 Hb_004453_160 0.094980006 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000847_090 Hb_000847_090 Hb_000556_060 Hb_000556_060 Hb_000847_090--Hb_000556_060 Hb_009847_010 Hb_009847_010 Hb_000847_090--Hb_009847_010 Hb_000375_220 Hb_000375_220 Hb_000847_090--Hb_000375_220 Hb_007044_240 Hb_007044_240 Hb_000847_090--Hb_007044_240 Hb_002307_140 Hb_002307_140 Hb_000847_090--Hb_002307_140 Hb_006711_030 Hb_006711_030 Hb_000847_090--Hb_006711_030 Hb_000556_060--Hb_009847_010 Hb_024071_030 Hb_024071_030 Hb_000556_060--Hb_024071_030 Hb_000556_060--Hb_007044_240 Hb_009663_020 Hb_009663_020 Hb_000556_060--Hb_009663_020 Hb_007120_120 Hb_007120_120 Hb_000556_060--Hb_007120_120 Hb_009847_010--Hb_024071_030 Hb_009847_010--Hb_007044_240 Hb_000127_240 Hb_000127_240 Hb_009847_010--Hb_000127_240 Hb_009847_010--Hb_000375_220 Hb_002030_010 Hb_002030_010 Hb_000375_220--Hb_002030_010 Hb_000375_220--Hb_000127_240 Hb_006614_020 Hb_006614_020 Hb_000375_220--Hb_006614_020 Hb_003006_070 Hb_003006_070 Hb_000375_220--Hb_003006_070 Hb_007044_240--Hb_002307_140 Hb_007218_050 Hb_007218_050 Hb_007044_240--Hb_007218_050 Hb_007044_240--Hb_006711_030 Hb_180535_010 Hb_180535_010 Hb_007044_240--Hb_180535_010 Hb_002307_140--Hb_007218_050 Hb_002307_140--Hb_006711_030 Hb_002307_140--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_002307_140--Hb_000816_180 Hb_007576_090 Hb_007576_090 Hb_002307_140--Hb_007576_090 Hb_167188_020 Hb_167188_020 Hb_006711_030--Hb_167188_020 Hb_006711_030--Hb_007218_050 Hb_000089_170 Hb_000089_170 Hb_006711_030--Hb_000089_170 Hb_000840_080 Hb_000840_080 Hb_006711_030--Hb_000840_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 13.6028 9.91702 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.123064 5.1554

CAGE analysis