Hb_007044_240

Information

Type -
Description -
Location Contig7044: 205589-212385
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13910g
description hypothetical protein
nr
ID XP_012077937.1
description PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9Y6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12963 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55037: 205629-212295
cDNA
(Sanger)
(ID:Location)		 040_N14.ab1: 205648-211769

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_240 0.0 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
2 Hb_002307_140 0.0515706433 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
3 Hb_000556_060 0.0584767314 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
4 Hb_007218_050 0.0603370141 - - zinc finger protein, putative [Ricinus communis]
5 Hb_006711_030 0.0643736831 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
6 Hb_009847_010 0.0667324225 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
7 Hb_180535_010 0.067211934 - - -
8 Hb_000847_090 0.0677501774 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
9 Hb_000127_240 0.0696837764 - - SAUR39 [Populus tomentosa]
10 Hb_007576_090 0.0748338293 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
11 Hb_000816_180 0.0771656881 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
12 Hb_000375_220 0.0856378819 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
13 Hb_000089_170 0.0858122621 - - PREDICTED: uncharacterized protein LOC105134595 [Populus euphratica]
14 Hb_007760_060 0.0881494471 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
15 Hb_132840_190 0.0892961388 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
16 Hb_002030_010 0.0904112332 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
17 Hb_061336_010 0.0912060021 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000840_080 0.0912066421 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
19 Hb_004453_160 0.0912172863 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006614_020 0.0936995056 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_007044_240 Hb_007044_240 Hb_002307_140 Hb_002307_140 Hb_007044_240--Hb_002307_140 Hb_000556_060 Hb_000556_060 Hb_007044_240--Hb_000556_060 Hb_007218_050 Hb_007218_050 Hb_007044_240--Hb_007218_050 Hb_006711_030 Hb_006711_030 Hb_007044_240--Hb_006711_030 Hb_009847_010 Hb_009847_010 Hb_007044_240--Hb_009847_010 Hb_180535_010 Hb_180535_010 Hb_007044_240--Hb_180535_010 Hb_002307_140--Hb_007218_050 Hb_002307_140--Hb_006711_030 Hb_002307_140--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_002307_140--Hb_000816_180 Hb_007576_090 Hb_007576_090 Hb_002307_140--Hb_007576_090 Hb_000556_060--Hb_009847_010 Hb_000847_090 Hb_000847_090 Hb_000556_060--Hb_000847_090 Hb_024071_030 Hb_024071_030 Hb_000556_060--Hb_024071_030 Hb_009663_020 Hb_009663_020 Hb_000556_060--Hb_009663_020 Hb_007120_120 Hb_007120_120 Hb_000556_060--Hb_007120_120 Hb_007218_050--Hb_180535_010 Hb_007218_050--Hb_000816_180 Hb_007218_050--Hb_006711_030 Hb_007218_050--Hb_007576_090 Hb_061336_010 Hb_061336_010 Hb_007218_050--Hb_061336_010 Hb_167188_020 Hb_167188_020 Hb_006711_030--Hb_167188_020 Hb_000089_170 Hb_000089_170 Hb_006711_030--Hb_000089_170 Hb_000840_080 Hb_000840_080 Hb_006711_030--Hb_000840_080 Hb_009847_010--Hb_000847_090 Hb_009847_010--Hb_024071_030 Hb_000127_240 Hb_000127_240 Hb_009847_010--Hb_000127_240 Hb_000375_220 Hb_000375_220 Hb_009847_010--Hb_000375_220 Hb_180535_010--Hb_000816_180 Hb_180535_010--Hb_007576_090 Hb_180535_010--Hb_061336_010 Hb_072952_010 Hb_072952_010 Hb_180535_010--Hb_072952_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 5.56258 3.60653 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0416929 0 0 0 1.89798

CAGE analysis