Hb_000816_180

Information

Type -
Description -
Location Contig816: 197228-197920
Sequence    

Annotation

kegg
ID rcu:RCOM_0689170
description hypothetical protein
nr
ID XP_012460613.1
description PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2V0E7
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G015800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_180 0.0 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
2 Hb_180535_010 0.0180433899 - - -
3 Hb_061336_010 0.0196810362 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007576_090 0.0301181783 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
5 Hb_007218_050 0.0340720149 - - zinc finger protein, putative [Ricinus communis]
6 Hb_002307_140 0.0440496525 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
7 Hb_072952_010 0.0492699008 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
8 Hb_028486_020 0.0542994748 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000258_400 0.0661677104 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
10 Hb_007760_060 0.0664727198 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
11 Hb_006711_030 0.0684768125 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
12 Hb_000375_100 0.0691498761 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
13 Hb_002893_220 0.0712747496 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
14 Hb_000010_430 0.0751867539 - - Esterase precursor, putative [Ricinus communis]
15 Hb_000840_080 0.0762179438 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
16 Hb_007044_240 0.0771656881 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
17 Hb_000127_240 0.0781910257 - - SAUR39 [Populus tomentosa]
18 Hb_000089_170 0.0800928375 - - PREDICTED: uncharacterized protein LOC105134595 [Populus euphratica]
19 Hb_167188_020 0.0827664298 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
20 Hb_000397_060 0.0917710865 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]

Gene co-expression network

sample Hb_000816_180 Hb_000816_180 Hb_180535_010 Hb_180535_010 Hb_000816_180--Hb_180535_010 Hb_061336_010 Hb_061336_010 Hb_000816_180--Hb_061336_010 Hb_007576_090 Hb_007576_090 Hb_000816_180--Hb_007576_090 Hb_007218_050 Hb_007218_050 Hb_000816_180--Hb_007218_050 Hb_002307_140 Hb_002307_140 Hb_000816_180--Hb_002307_140 Hb_072952_010 Hb_072952_010 Hb_000816_180--Hb_072952_010 Hb_180535_010--Hb_007576_090 Hb_180535_010--Hb_061336_010 Hb_180535_010--Hb_007218_050 Hb_180535_010--Hb_002307_140 Hb_180535_010--Hb_072952_010 Hb_061336_010--Hb_007576_090 Hb_028486_020 Hb_028486_020 Hb_061336_010--Hb_028486_020 Hb_061336_010--Hb_072952_010 Hb_061336_010--Hb_007218_050 Hb_007760_060 Hb_007760_060 Hb_007576_090--Hb_007760_060 Hb_007576_090--Hb_072952_010 Hb_007576_090--Hb_007218_050 Hb_007218_050--Hb_002307_140 Hb_006711_030 Hb_006711_030 Hb_007218_050--Hb_006711_030 Hb_002307_140--Hb_006711_030 Hb_007044_240 Hb_007044_240 Hb_002307_140--Hb_007044_240 Hb_002307_140--Hb_007576_090 Hb_000375_100 Hb_000375_100 Hb_072952_010--Hb_000375_100 Hb_000258_400 Hb_000258_400 Hb_072952_010--Hb_000258_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 7.7438 3.64045 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.03848

CAGE analysis