Hb_007576_090

Information

Type -
Description -
Location Contig7576: 72864-73214
Sequence    

Annotation

kegg
ID vvi:100261985
description non-specific lipid-transfer protein P5
nr
ID AFR43276.1
description lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
swissprot
ID Q43129
description Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1
trembl
ID U5HU82
description Non-specific lipid-transfer protein OS=Gossypium barbadense GN=LTP3 PE=3 SV=1
Gene Ontology
ID GO:0008289
description lipid transfer protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57115: 72453-73312
cDNA
(Sanger)
(ID:Location)		 001_B12.ab1: 72467-73312 , 001_E20.ab1: 72463-73311 , 001_G15.ab1: 72467-73312 , 002_B06.ab1: 72462-73312 , 002_H11.ab1: 72455-73314 , 002_H18.ab1: 72455-73312 , 002_J06.ab1: 72456-73314 , 002_L08.ab1: 72467-73315 , 002_M05.ab1: 72462-73312 , 002_N12.ab1: 72460-73312 , 002_N16.ab1: 72472-73314 , 002_O18.ab1: 72457-73311 , 002_P23.ab1: 72467-73312 , 003_C21.ab1: 72456-73314 , 003_E05.ab1: 72475-73314 , 003_F16.ab1: 72461-73314 , 003_G08.ab1: 72457-73314 , 003_H18.ab1: 72482-73314 , 003_M17.ab1: 72483-73314 , 003_N17.ab1: 72453-73314 , 003_O11.ab1: 72481-73314 , 003_O18.ab1: 72462-73311 , 003_O21.ab1: 72467-73314 , 003_P17.ab1: 72467-73312 , 004_B08.ab1: 72473-73312 , 004_C05.ab1: 72464-73312 , 004_G03.ab1: 72466-73312 , 004_N19.ab1: 72481-73314 , 005_A10.ab1: 72467-73314 , 005_A15.ab1: 72461-73312 , 005_E19.ab1: 72468-73314 , 005_J01.ab1: 72469-73311 , 005_P01.ab1: 72461-73314 , 006_D03.ab1: 72484-73314 , 006_O01.ab1: 72457-73314 , 006_O16.ab1: 72453-73314 , 006_P07.ab1: 72467-73314 , 007_B07.ab1: 72467-73314 , 007_B15.ab1: 72456-73312 , 007_P04.ab1: 72464-73312 , 008_A12.ab1: 72457-73312 , 008_F03.ab1: 72462-73312 , 008_J23.ab1: 72534-73311 , 008_L20.ab1: 72462-73312 , 008_L21.ab1: 73005-73312 , 008_M11.ab1: 72474-73314 , 008_M23.ab1: 72467-73314 , 008_N10.ab1: 72496-73314 , 009_A18.ab1: 72462-73312 , 009_B16.ab1: 72461-73312 , 009_K18.ab1: 72453-73314 , 009_L01.ab1: 72546-73305 , 009_L20.ab1: 72462-73312 , 010_B06.ab1: 72483-73312 , 010_F24.ab1: 72480-73312 , 010_G19.ab1: 72654-73311 , 010_I19.ab1: 72652-73314 , 010_L16.ab1: 72467-73314 , 010_O07.ab1: 72461-73314 , 011_D16.ab1: 72455-73311 , 011_E10.ab1: 72467-73314 , 011_E15.ab1: 72456-73314 , 011_G16.ab1: 72467-73311 , 011_J07.ab1: 72464-73312 , 011_L05.ab1: 72469-73314 , 011_O13.ab1: 72456-73314 , 011_P08.ab1: 72462-73312 , 012_A12.ab1: 72469-73314 , 012_B16.ab1: 72480-73314 , 012_C07.ab1: 72454-73314 , 012_D06.ab1: 72467-73293 , 012_F13.ab1: 72469-73314 , 012_G21.ab1: 72515-73312 , 012_J11.ab1: 72483-73308 , 012_K18.ab1: 72469-73314 , 012_L05.ab1: 72486-73311 , 012_M21.ab1: 72469-73312 , 012_O10.ab1: 72469-73314 , 013_D18.ab1: 72457-73314 , 013_J08.ab1: 72469-73314 , 013_L16.ab1: 72531-73314 , 013_M07.ab1: 72485-73323 , 013_M16.ab1: 72467-73311 , 013_N16.ab1: 72467-73316 , 013_O01.ab1: 72467-73314 , 013_P07.ab1: 72469-73314 , 013_P18.ab1: 72467-73323 , 014_A08.ab1: 72467-73314 , 014_C06.ab1: 72485-73314 , 014_G17.ab1: 72457-73314 , 014_H05.ab1: 72464-73312 , 014_L11.ab1: 72467-73312 , 015_F23.ab1: 72468-73121 , 015_I19.ab1: 72467-73312 , 015_J20.ab1: 72473-73311 , 015_L23.ab1: 72462-73314 , 015_N21.ab1: 72454-73314 , 015_P22.ab1: 72474-73314 , 016_A19.ab1: 72467-73312 , 016_C04.ab1: 72467-73312 , 016_D02.ab1: 72453-73312 , 016_J20.ab1: 72469-73324 , 016_M23.ab1: 72465-73314 , 016_N22.ab1: 72456-73312 , 016_O23.ab1: 72457-73314 , 016_P08.ab1: 72454-73314 , 016_P13.ab1: 72453-73312 , 017_C11.ab1: 73058-73235 , 017_D11.ab1: 72457-73311 , 017_K24.ab1: 72453-73311 , 017_L20.ab1: 72453-73315 , 018_A07.ab1: 72483-73314 , 018_C18.ab1: 72469-73316 , 018_F16.ab1: 72459-73312 , 018_G02.ab1: 72467-73311 , 018_J16.ab1: 72469-73316 , 018_N10.ab1: 72469-73314 , 018_N17.ab1: 72461-73314 , 018_O08.ab1: 72469-73312 , 018_P22.ab1: 72467-73314 , 019_I04.ab1: 72462-73323 , 019_K18.ab1: 72453-73313 , 019_M04.ab1: 72467-73311 , 019_M18.ab1: 72457-73314 , 019_M20.ab1: 72454-73312 , 019_O06.ab1: 72457-73308 , 019_P04.ab1: 72456-73313 , 020_A16.ab1: 72453-73312 , 020_A22.ab1: 72469-73312 , 020_C22.ab1: 72455-73312 , 020_E16.ab1: 72484-73314 , 020_E20.ab1: 72483-73312 , 020_F04.ab1: 72453-73312 , 020_F13.ab1: 72453-73312 , 020_G02.ab1: 72461-73314 , 020_G17.ab1: 72469-73311 , 020_H17.ab1: 72456-73314 , 020_I01.ab1: 72466-73319 , 020_I07.ab1: 72467-73314 , 020_J15.ab1: 72454-73314 , 020_L13.ab1: 72468-73314 , 020_L20.ab1: 72461-73313 , 020_M18.ab1: 72468-73314 , 020_N16.ab1: 72461-73314 , 021_A05.ab1: 72462-73312 , 021_M10.ab1: 72460-73311 , 021_P13.ab1: 72467-73312 , 022_B21.ab1: 72456-73323 , 022_G13.ab1: 72456-73312 , 022_G16.ab1: 72469-73313 , 022_O21.ab1: 72916-73292 , 022_P08.ab1: 72464-73314 , 023_A04.ab1: 72452-73311 , 023_C17.ab1: 72551-73313 , 023_D18.ab1: 72467-73310 , 023_F14.ab1: 72456-73311 , 023_G22.ab1: 72484-73312 , 023_I12.ab1: 72457-73313 , 023_M17.ab1: 72652-73312 , 023_O02.ab1: 72469-73311 , 023_O17.ab1: 72593-73314 , 023_P04.ab1: 72661-73310 , 024_A16.ab1: 72467-73314 , 024_D07.ab1: 72466-73312 , 024_D14.ab1: 72467-73316 , 024_F21.ab1: 72467-73312 , 024_J14.ab1: 72469-73316 , 024_K23.ab1: 72467-73295 , 025_B04.ab1: 72453-73323 , 025_C05.ab1: 72453-73313 , 025_D06.ab1: 72460-73312 , 025_N21.ab1: 72465-73314 , 025_P08.ab1: 72463-73314 , 026_C09.ab1: 72472-73294 , 026_D18.ab1: 72467-73314 , 026_H02.ab1: 72457-73314 , 026_H20.ab1: 72457-73312 , 026_K08.ab1: 72474-73311 , 027_A08.ab1: 72469-73312 , 027_B17.ab1: 72453-73309 , 027_C22.ab1: 73005-73297 , 027_E03.ab1: 72457-73314 , 027_J08.ab1: 72484-73314 , 027_M03.ab1: 72467-73312 , 027_N10.ab1: 72486-73314 , 027_O08.ab1: 72469-73313 , 028_B06.ab1: 72473-73314 , 028_E08.ab1: 72469-73311 , 028_E11.ab1: 72462-73314 , 028_E21.ab1: 72484-73314 , 028_F07.ab1: 72457-73314 , 028_J24.ab1: 72467-73311 , 028_P04.ab1: 72469-73314 , 028_P14.ab1: 72458-73314 , 029_A17.ab1: 72469-73312 , 029_D03.ab1: 72580-73310 , 029_H10.ab1: 72469-73311 , 029_H14.ab1: 72457-73313 , 029_I24.ab1: 72534-73291 , 029_K09.ab1: 72462-73314 , 029_K16.ab1: 72626-73308 , 029_L04.ab1: 72456-73314 , 029_L11.ab1: 72468-73311 , 029_O06.ab1: 72463-73311 , 030_A10.ab1: 72463-73323 , 030_F04.ab1: 72469-73314 , 030_F16.ab1: 72464-73311 , 030_I05.ab1: 72516-73312 , 030_J20.ab1: 72484-73314 , 030_M03.ab1: 72462-73312 , 031_A20.ab1: 72461-73312 , 031_B16.ab1: 72480-73316 , 031_E12.ab1: 72467-73314 , 031_I05.ab1: 72457-73314 , 031_J13.ab1: 72456-73314 , 031_O17.ab1: 72520-73313 , 031_P01.ab1: 72467-73314 , 031_P09.ab1: 72457-73314 , 032_B17.ab1: 72469-73310 , 032_E22.ab1: 72467-73314 , 032_F07.ab1: 72461-73314 , 032_K14.ab1: 72467-73314 , 033_D22.ab1: 72453-73314 , 033_F06.ab1: 72467-73311 , 033_F10.ab1: 72467-73314 , 033_J11.ab1: 72456-73314 , 033_K20.ab1: 72467-73314 , 034_E18.ab1: 72456-73314 , 034_F18.ab1: 72456-73312 , 034_M11.ab1: 72467-73314 , 034_M18.ab1: 72467-73314 , 034_O19.ab1: 72457-73314 , 035_D17.ab1: 72467-73312 , 035_E01.ab1: 72457-73313 , 035_K05.ab1: 72466-73312 , 036_B10.ab1: 72457-73312 , 036_F04.ab1: 72453-73312 , 036_J17.ab1: 72462-73312 , 037_E20.ab1: 72467-73311 , 037_F16.ab1: 72467-73312 , 037_P22.ab1: 72464-73311 , 038_C15.ab1: 72474-73314 , 038_D06.ab1: 72467-73303 , 038_F22.ab1: 72453-73314 , 038_G17.ab1: 72461-73314 , 038_H07.ab1: 72466-73315 , 038_I13.ab1: 72467-73314 , 038_J01.ab1: 72468-73314 , 039_D24.ab1: 72485-73314 , 039_K19.ab1: 72467-73311 , 039_M03.ab1: 72467-73314 , 039_O04.ab1: 72462-73312 , 040_A10.ab1: 72473-73314 , 040_F07.ab1: 72461-73314 , 040_J14.ab1: 72454-73311 , 040_L08.ab1: 72469-73314 , 041_A08.ab1: 72511-73316 , 041_B21.ab1: 72453-73312 , 041_C04.ab1: 72467-73314 , 041_D02.ab1: 72469-73314 , 041_F07.ab1: 72464-73316 , 041_H01.ab1: 72463-73314 , 041_I01.ab1: 72467-73300 , 041_I04.ab1: 72467-73312 , 041_K18.ab1: 72453-73308 , 041_N14.ab1: 72462-73311 , 041_O24.ab1: 72467-73312 , 041_P08.ab1: 72472-73311 , 041_P11.ab1: 72484-73314 , 042_B17.ab1: 72467-73311 , 042_F11.ab1: 72484-73314 , 042_G21.ab1: 72483-73314 , 042_H18.ab1: 72484-73314 , 042_H21.ab1: 72457-73312 , 042_M14.ab1: 72488-73311 , 042_P08.ab1: 72467-73311 , 043_B11.ab1: 72483-73314 , 043_D18.ab1: 72461-73314 , 043_K12.ab1: 72483-73311 , 043_L09.ab1: 72486-73311 , 043_L13.ab1: 72486-73313 , 044_A06.ab1: 72462-73323 , 044_C19.ab1: 72456-73314 , 044_H08.ab1: 72454-73311 , 044_J19.ab1: 72453-73311 , 044_K03.ab1: 72453-73323 , 044_K04.ab1: 72453-73313 , 044_L10.ab1: 72469-73312 , 044_N14.ab1: 72467-73314 , 044_P20.ab1: 72456-73314 , 045_B05.ab1: 72467-73314 , 045_B07.ab1: 72484-73306 , 045_D04.ab1: 72467-73323 , 045_E13.ab1: 72463-73319 , 045_G16.ab1: 72469-73314 , 045_I18.ab1: 72455-73314 , 045_J16.ab1: 72486-73314 , 045_L03.ab1: 72457-73313 , 045_L04.ab1: 72467-73314 , 046_G02.ab1: 72467-73314 , 046_H09.ab1: 72461-73314 , 046_N01.ab1: 72468-73313 , 047_A07.ab1: 72464-73316 , 047_G08.ab1: 72486-73316 , 047_G17.ab1: 72467-73314 , 047_I08.ab1: 72467-73315 , 047_M15.ab1: 72453-73314 , 048_A23.ab1: 72462-73312 , 048_C10.ab1: 72469-73311 , 048_E04.ab1: 72467-73311 , 048_E18.ab1: 72457-73311 , 048_F21.ab1: 72469-73312 , 048_G22.ab1: 72454-73312 , 048_L18.ab1: 72454-73312 , 049_A12.ab1: 72458-73314 , 049_B09.ab1: 72463-73311 , 049_B11.ab1: 72527-73314 , 049_E10.ab1: 72456-73314 , 050_E06.ab1: 72469-73311 , 050_E14.ab1: 72472-73315 , 050_H02.ab1: 72453-73311 , 050_J03.ab1: 72469-73314 , 050_K08.ab1: 72469-73314 , 050_K09.ab1: 72469-73312 , 050_L01.ab1: 72453-73312 , 051_B19.ab1: 72463-73311 , 051_D18.ab1: 72467-73312 , 051_D22.ab1: 72480-73311 , 051_F11.ab1: 72456-73314 , 051_I17.ab1: 72462-73314 , 051_K23.ab1: 72453-73314 , 051_M16.ab1: 72467-73314 , 051_M22.ab1: 72462-73323 , 051_N18.ab1: 72468-73311 , 052_A13.ab1: 72469-73314 , 052_A18.ab1: 72462-73314 , 052_B07.ab1: 72467-73308 , 052_C23.ab1: 72467-73314 , 052_H12.ab1: 72461-73311 , 052_L01.ab1: 72457-73314 , 052_L10.ab1: 72467-73312 , 053_L16.ab1: 72466-73315

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_090 0.0 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
2 Hb_180535_010 0.0200782811 - - -
3 Hb_000816_180 0.0301181783 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
4 Hb_061336_010 0.0319466635 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007760_060 0.043461322 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
6 Hb_072952_010 0.0439123486 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
7 Hb_007218_050 0.0477821743 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000375_100 0.052061928 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
9 Hb_002307_140 0.0527090798 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
10 Hb_000127_240 0.0575458539 - - SAUR39 [Populus tomentosa]
11 Hb_000010_430 0.059171664 - - Esterase precursor, putative [Ricinus communis]
12 Hb_028486_020 0.0630709624 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000258_400 0.0680901418 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
14 Hb_007044_240 0.0748338293 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
15 Hb_006614_020 0.0801285386 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
16 Hb_006711_030 0.0823325282 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
17 Hb_000073_040 0.0851544546 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
18 Hb_002030_010 0.0882201919 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
19 Hb_000840_080 0.0894239085 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
20 Hb_000397_060 0.0894258457 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]

Gene co-expression network

sample Hb_007576_090 Hb_007576_090 Hb_180535_010 Hb_180535_010 Hb_007576_090--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_007576_090--Hb_000816_180 Hb_061336_010 Hb_061336_010 Hb_007576_090--Hb_061336_010 Hb_007760_060 Hb_007760_060 Hb_007576_090--Hb_007760_060 Hb_072952_010 Hb_072952_010 Hb_007576_090--Hb_072952_010 Hb_007218_050 Hb_007218_050 Hb_007576_090--Hb_007218_050 Hb_180535_010--Hb_000816_180 Hb_180535_010--Hb_061336_010 Hb_180535_010--Hb_007218_050 Hb_002307_140 Hb_002307_140 Hb_180535_010--Hb_002307_140 Hb_180535_010--Hb_072952_010 Hb_000816_180--Hb_061336_010 Hb_000816_180--Hb_007218_050 Hb_000816_180--Hb_002307_140 Hb_000816_180--Hb_072952_010 Hb_028486_020 Hb_028486_020 Hb_061336_010--Hb_028486_020 Hb_061336_010--Hb_072952_010 Hb_061336_010--Hb_007218_050 Hb_000127_240 Hb_000127_240 Hb_007760_060--Hb_000127_240 Hb_000375_100 Hb_000375_100 Hb_007760_060--Hb_000375_100 Hb_000010_430 Hb_000010_430 Hb_007760_060--Hb_000010_430 Hb_007760_060--Hb_180535_010 Hb_007760_060--Hb_072952_010 Hb_072952_010--Hb_000375_100 Hb_000258_400 Hb_000258_400 Hb_072952_010--Hb_000258_400 Hb_007218_050--Hb_002307_140 Hb_006711_030 Hb_006711_030 Hb_007218_050--Hb_006711_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 17.0346 50861.8 26348.3 0.62601 23.6609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.204183 0 0.180927 12189.3

CAGE analysis