Hb_001266_150

Information

Type -
Description -
Location Contig1266: 139527-142746
Sequence    

Annotation

kegg
ID rcu:RCOM_0535580
description replication factor C / DNA polymerase III gamma-tau subunit, putative
nr
ID KDP31645.1
description hypothetical protein JCGZ_14961 [Jatropha curcas]
swissprot
ID Q8VXX4
description Replication factor C subunit 3 OS=Arabidopsis thaliana GN=RFC3 PE=2 SV=1
trembl
ID A0A067KHB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14961 PE=4 SV=1
Gene Ontology
ID GO:0003677
description replication factor c dna polymerase iii gamma-tau

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08048: 139240-140186 , PASA_asmbl_08049: 140314-141547 , PASA_asmbl_08050: 141560-141789 , PASA_asmbl_08052: 142707-142901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001266_150 0.0 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
2 Hb_000932_110 0.146350749 - - Root phototropism protein, putative [Ricinus communis]
3 Hb_059567_010 0.1539439553 - - PREDICTED: transcription factor PAR2-like [Jatropha curcas]
4 Hb_004093_030 0.1567688545 - - hypothetical protein RCOM_1406750 [Ricinus communis]
5 Hb_001140_190 0.1667968616 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
6 Hb_000352_010 0.1671985871 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
7 Hb_010288_030 0.1678729608 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
8 Hb_000206_030 0.1679299356 - - PREDICTED: uncharacterized protein LOC105639682 [Jatropha curcas]
9 Hb_018133_070 0.1682145375 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
10 Hb_011457_120 0.1747022048 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
11 Hb_000210_200 0.1827531516 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
12 Hb_010683_030 0.1862905222 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006133_020 0.1866792514 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
14 Hb_007479_010 0.1906180186 - - Root phototropism protein, putative [Ricinus communis]
15 Hb_003020_190 0.1930410047 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
16 Hb_001347_030 0.1942997392 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_000169_070 0.1957940904 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
18 Hb_000340_410 0.1973962173 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
19 Hb_001227_070 0.1980700968 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
20 Hb_004447_050 0.1986375625 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001266_150 Hb_001266_150 Hb_000932_110 Hb_000932_110 Hb_001266_150--Hb_000932_110 Hb_059567_010 Hb_059567_010 Hb_001266_150--Hb_059567_010 Hb_004093_030 Hb_004093_030 Hb_001266_150--Hb_004093_030 Hb_001140_190 Hb_001140_190 Hb_001266_150--Hb_001140_190 Hb_000352_010 Hb_000352_010 Hb_001266_150--Hb_000352_010 Hb_010288_030 Hb_010288_030 Hb_001266_150--Hb_010288_030 Hb_007479_010 Hb_007479_010 Hb_000932_110--Hb_007479_010 Hb_000932_110--Hb_001140_190 Hb_018133_070 Hb_018133_070 Hb_000932_110--Hb_018133_070 Hb_003581_230 Hb_003581_230 Hb_000932_110--Hb_003581_230 Hb_000438_160 Hb_000438_160 Hb_000932_110--Hb_000438_160 Hb_029576_060 Hb_029576_060 Hb_000932_110--Hb_029576_060 Hb_000925_150 Hb_000925_150 Hb_059567_010--Hb_000925_150 Hb_059567_010--Hb_001140_190 Hb_011457_120 Hb_011457_120 Hb_059567_010--Hb_011457_120 Hb_059567_010--Hb_000932_110 Hb_000958_160 Hb_000958_160 Hb_059567_010--Hb_000958_160 Hb_001817_040 Hb_001817_040 Hb_004093_030--Hb_001817_040 Hb_011033_010 Hb_011033_010 Hb_004093_030--Hb_011033_010 Hb_000061_430 Hb_000061_430 Hb_004093_030--Hb_000061_430 Hb_028487_060 Hb_028487_060 Hb_004093_030--Hb_028487_060 Hb_004093_030--Hb_011457_120 Hb_001511_210 Hb_001511_210 Hb_001140_190--Hb_001511_210 Hb_001140_190--Hb_000438_160 Hb_005276_140 Hb_005276_140 Hb_001140_190--Hb_005276_140 Hb_000071_060 Hb_000071_060 Hb_001140_190--Hb_000071_060 Hb_000331_170 Hb_000331_170 Hb_001140_190--Hb_000331_170 Hb_001140_190--Hb_001817_040 Hb_000352_010--Hb_010288_030 Hb_001680_020 Hb_001680_020 Hb_000352_010--Hb_001680_020 Hb_000352_010--Hb_001140_190 Hb_071674_010 Hb_071674_010 Hb_000352_010--Hb_071674_010 Hb_004115_010 Hb_004115_010 Hb_000352_010--Hb_004115_010 Hb_000139_040 Hb_000139_040 Hb_000352_010--Hb_000139_040 Hb_010288_030--Hb_071674_010 Hb_003020_190 Hb_003020_190 Hb_010288_030--Hb_003020_190 Hb_010288_030--Hb_011033_010 Hb_001755_040 Hb_001755_040 Hb_010288_030--Hb_001755_040 Hb_007574_020 Hb_007574_020 Hb_010288_030--Hb_007574_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.268423 0.0554714 2.01318 1.08103 0.0181914 0.160245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0619025 0.016236 0.0925587 0.019364 0.962945

CAGE analysis