Hb_000958_160

Information

Type -
Description -
Location Contig958: 139331-140740
Sequence    

Annotation

kegg
ID rcu:RCOM_0968220
description carboxy-lyase, putative
nr
ID XP_012065575.1
description PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like isoform X1 [Jatropha curcas]
swissprot
ID Q8RUN2
description Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 OS=Arabidopsis thaliana GN=LOG1 PE=1 SV=1
trembl
ID A0A067L8A3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16770 PE=4 SV=1
Gene Ontology
ID GO:0016829
description cytokinin riboside 5 -monophosphate phosphoribohydrolase log1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63604: 138702-139691 , PASA_asmbl_63605: 140140-140926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000958_160 0.0 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like isoform X1 [Jatropha curcas]
2 Hb_000258_400 0.0967340623 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
3 Hb_000089_170 0.1022228248 - - PREDICTED: uncharacterized protein LOC105134595 [Populus euphratica]
4 Hb_072952_010 0.1049222351 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
5 Hb_007218_050 0.1073309904 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000816_180 0.1076600963 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
7 Hb_007576_090 0.1083407912 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
8 Hb_180535_010 0.1087842739 - - -
9 Hb_002307_140 0.1110496315 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
10 Hb_000073_040 0.1112702659 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
11 Hb_061336_010 0.111950006 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000847_090 0.1189005963 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
13 Hb_006711_030 0.1194967527 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
14 Hb_132840_190 0.1232097346 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
15 Hb_028486_020 0.1234798583 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000397_060 0.1256421208 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
17 Hb_072620_010 0.125762511 - - PREDICTED: receptor-like protein kinase 2 [Cucumis melo]
18 Hb_002893_220 0.1264552185 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
19 Hb_000840_080 0.1266157434 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
20 Hb_007044_240 0.1268941125 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000958_160 Hb_000958_160 Hb_000258_400 Hb_000258_400 Hb_000958_160--Hb_000258_400 Hb_000089_170 Hb_000089_170 Hb_000958_160--Hb_000089_170 Hb_072952_010 Hb_072952_010 Hb_000958_160--Hb_072952_010 Hb_007218_050 Hb_007218_050 Hb_000958_160--Hb_007218_050 Hb_000816_180 Hb_000816_180 Hb_000958_160--Hb_000816_180 Hb_007576_090 Hb_007576_090 Hb_000958_160--Hb_007576_090 Hb_000258_400--Hb_072952_010 Hb_180535_010 Hb_180535_010 Hb_000258_400--Hb_180535_010 Hb_000258_400--Hb_000816_180 Hb_000073_040 Hb_000073_040 Hb_000258_400--Hb_000073_040 Hb_000258_400--Hb_007576_090 Hb_061336_010 Hb_061336_010 Hb_000258_400--Hb_061336_010 Hb_006711_030 Hb_006711_030 Hb_000089_170--Hb_006711_030 Hb_167188_020 Hb_167188_020 Hb_000089_170--Hb_167188_020 Hb_002307_140 Hb_002307_140 Hb_000089_170--Hb_002307_140 Hb_000089_170--Hb_007218_050 Hb_012675_040 Hb_012675_040 Hb_000089_170--Hb_012675_040 Hb_132840_190 Hb_132840_190 Hb_000089_170--Hb_132840_190 Hb_072952_010--Hb_061336_010 Hb_072952_010--Hb_007576_090 Hb_000375_100 Hb_000375_100 Hb_072952_010--Hb_000375_100 Hb_072952_010--Hb_180535_010 Hb_072952_010--Hb_000816_180 Hb_007218_050--Hb_002307_140 Hb_007218_050--Hb_180535_010 Hb_007218_050--Hb_000816_180 Hb_007218_050--Hb_006711_030 Hb_007218_050--Hb_007576_090 Hb_007218_050--Hb_061336_010 Hb_000816_180--Hb_180535_010 Hb_000816_180--Hb_061336_010 Hb_000816_180--Hb_007576_090 Hb_000816_180--Hb_002307_140 Hb_007576_090--Hb_180535_010 Hb_007576_090--Hb_061336_010 Hb_007760_060 Hb_007760_060 Hb_007576_090--Hb_007760_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.45343 1.19585 0 0.0710145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0297126 0.709868

CAGE analysis