Hb_059567_010

Information

Type -
Description -
Location Contig59567: 110-541
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06090g
description POPTRDRAFT_643394; hypothetical protein
nr
ID XP_012077897.1
description PREDICTED: transcription factor PAR2-like [Jatropha curcas]
swissprot
ID Q9SJH0
description Transcription factor PAR1 OS=Arabidopsis thaliana GN=PAR1 PE=1 SV=1
trembl
ID A9P8M3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06090g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059567_010 0.0 - - PREDICTED: transcription factor PAR2-like [Jatropha curcas]
2 Hb_001266_150 0.1539439553 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
3 Hb_000925_150 0.1558862294 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
4 Hb_001140_190 0.1580889425 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
5 Hb_011457_120 0.1592143603 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
6 Hb_000932_110 0.1596629879 - - Root phototropism protein, putative [Ricinus communis]
7 Hb_000958_160 0.1639840489 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like isoform X1 [Jatropha curcas]
8 Hb_001053_170 0.1715059437 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
9 Hb_003935_090 0.171925034 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
10 Hb_002374_470 0.1730736666 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
11 Hb_000020_040 0.177373535 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
12 Hb_004079_090 0.1783724555 - - hypothetical protein RCOM_1053120 [Ricinus communis]
13 Hb_000210_200 0.179894265 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
14 Hb_018133_070 0.1837019995 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
15 Hb_000352_010 0.1842335136 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
16 Hb_010288_030 0.1843304845 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
17 Hb_001511_210 0.1848211366 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
18 Hb_002045_160 0.1850751963 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
19 Hb_000243_230 0.1853863143 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_004093_030 0.1862865319 - - hypothetical protein RCOM_1406750 [Ricinus communis]

Gene co-expression network

sample Hb_059567_010 Hb_059567_010 Hb_001266_150 Hb_001266_150 Hb_059567_010--Hb_001266_150 Hb_000925_150 Hb_000925_150 Hb_059567_010--Hb_000925_150 Hb_001140_190 Hb_001140_190 Hb_059567_010--Hb_001140_190 Hb_011457_120 Hb_011457_120 Hb_059567_010--Hb_011457_120 Hb_000932_110 Hb_000932_110 Hb_059567_010--Hb_000932_110 Hb_000958_160 Hb_000958_160 Hb_059567_010--Hb_000958_160 Hb_001266_150--Hb_000932_110 Hb_004093_030 Hb_004093_030 Hb_001266_150--Hb_004093_030 Hb_001266_150--Hb_001140_190 Hb_000352_010 Hb_000352_010 Hb_001266_150--Hb_000352_010 Hb_010288_030 Hb_010288_030 Hb_001266_150--Hb_010288_030 Hb_018133_070 Hb_018133_070 Hb_000925_150--Hb_018133_070 Hb_002374_470 Hb_002374_470 Hb_000925_150--Hb_002374_470 Hb_012055_080 Hb_012055_080 Hb_000925_150--Hb_012055_080 Hb_005890_020 Hb_005890_020 Hb_000925_150--Hb_005890_020 Hb_004115_010 Hb_004115_010 Hb_000925_150--Hb_004115_010 Hb_011033_010 Hb_011033_010 Hb_000925_150--Hb_011033_010 Hb_001511_210 Hb_001511_210 Hb_001140_190--Hb_001511_210 Hb_000438_160 Hb_000438_160 Hb_001140_190--Hb_000438_160 Hb_005276_140 Hb_005276_140 Hb_001140_190--Hb_005276_140 Hb_000071_060 Hb_000071_060 Hb_001140_190--Hb_000071_060 Hb_000331_170 Hb_000331_170 Hb_001140_190--Hb_000331_170 Hb_001817_040 Hb_001817_040 Hb_001140_190--Hb_001817_040 Hb_002942_150 Hb_002942_150 Hb_011457_120--Hb_002942_150 Hb_000020_040 Hb_000020_040 Hb_011457_120--Hb_000020_040 Hb_011457_120--Hb_004093_030 Hb_000206_030 Hb_000206_030 Hb_011457_120--Hb_000206_030 Hb_011457_120--Hb_001266_150 Hb_007479_010 Hb_007479_010 Hb_000932_110--Hb_007479_010 Hb_000932_110--Hb_001140_190 Hb_000932_110--Hb_018133_070 Hb_003581_230 Hb_003581_230 Hb_000932_110--Hb_003581_230 Hb_000932_110--Hb_000438_160 Hb_029576_060 Hb_029576_060 Hb_000932_110--Hb_029576_060 Hb_000258_400 Hb_000258_400 Hb_000958_160--Hb_000258_400 Hb_000089_170 Hb_000089_170 Hb_000958_160--Hb_000089_170 Hb_072952_010 Hb_072952_010 Hb_000958_160--Hb_072952_010 Hb_007218_050 Hb_007218_050 Hb_000958_160--Hb_007218_050 Hb_000816_180 Hb_000816_180 Hb_000958_160--Hb_000816_180 Hb_007576_090 Hb_007576_090 Hb_000958_160--Hb_007576_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34295 0 22.5186 9.42833 0.20677 1.17498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172644 0 0.221935 0.630853 6.83734

CAGE analysis