Hb_000020_040

Information

Type -
Description -
Location Contig20: 44551-49261
Sequence    

Annotation

kegg
ID rcu:RCOM_1266090
description S-adenosylmethionine-dependent methyltransferase, putative
nr
ID XP_002530544.1
description S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
swissprot
ID Q9ZW75
description Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1
trembl
ID B9SX25
description S-adenosylmethionine-dependent methyltransferase, putative OS=Ricinus communis GN=RCOM_1266090 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20129: 44648-46892 , PASA_asmbl_20130: 46971-47328 , PASA_asmbl_20131: 48612-48972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000020_040 0.0 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
2 Hb_004079_090 0.1309160531 - - hypothetical protein RCOM_1053120 [Ricinus communis]
3 Hb_011457_120 0.1309998095 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
4 Hb_001755_040 0.1342642187 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
5 Hb_002232_310 0.1348867614 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
6 Hb_011360_130 0.1473993351 - - conserved hypothetical protein [Ricinus communis]
7 Hb_014497_070 0.1482726302 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
8 Hb_001662_120 0.1549819562 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
9 Hb_081529_010 0.1552899652 - - unnamed protein product [Vitis vinifera]
10 Hb_003109_010 0.1582004335 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
11 Hb_010705_040 0.1610744073 - - PREDICTED: kinesin-4 [Jatropha curcas]
12 Hb_008406_100 0.1629979496 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
13 Hb_003935_090 0.1648164736 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
14 Hb_000479_020 0.1653327964 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000936_030 0.1683022218 - - hypothetical protein RCOM_0615680 [Ricinus communis]
16 Hb_001501_070 0.1698322025 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
17 Hb_000002_430 0.1716331917 - - PREDICTED: FHA domain-containing protein At4g14490 [Populus euphratica]
18 Hb_002942_150 0.1767751179 - - serine carboxypeptidase, putative [Ricinus communis]
19 Hb_059567_010 0.177373535 - - PREDICTED: transcription factor PAR2-like [Jatropha curcas]
20 Hb_002701_230 0.1787044527 - - PREDICTED: uncharacterized protein LOC105646833 [Jatropha curcas]

Gene co-expression network

sample Hb_000020_040 Hb_000020_040 Hb_004079_090 Hb_004079_090 Hb_000020_040--Hb_004079_090 Hb_011457_120 Hb_011457_120 Hb_000020_040--Hb_011457_120 Hb_001755_040 Hb_001755_040 Hb_000020_040--Hb_001755_040 Hb_002232_310 Hb_002232_310 Hb_000020_040--Hb_002232_310 Hb_011360_130 Hb_011360_130 Hb_000020_040--Hb_011360_130 Hb_014497_070 Hb_014497_070 Hb_000020_040--Hb_014497_070 Hb_000002_430 Hb_000002_430 Hb_004079_090--Hb_000002_430 Hb_004079_090--Hb_001755_040 Hb_000936_030 Hb_000936_030 Hb_004079_090--Hb_000936_030 Hb_004079_090--Hb_002232_310 Hb_003935_090 Hb_003935_090 Hb_004079_090--Hb_003935_090 Hb_002942_150 Hb_002942_150 Hb_011457_120--Hb_002942_150 Hb_059567_010 Hb_059567_010 Hb_011457_120--Hb_059567_010 Hb_004093_030 Hb_004093_030 Hb_011457_120--Hb_004093_030 Hb_000206_030 Hb_000206_030 Hb_011457_120--Hb_000206_030 Hb_001266_150 Hb_001266_150 Hb_011457_120--Hb_001266_150 Hb_001755_040--Hb_002232_310 Hb_004109_100 Hb_004109_100 Hb_001755_040--Hb_004109_100 Hb_001755_040--Hb_000936_030 Hb_007574_020 Hb_007574_020 Hb_001755_040--Hb_007574_020 Hb_001755_040--Hb_003935_090 Hb_010705_040 Hb_010705_040 Hb_001755_040--Hb_010705_040 Hb_002232_310--Hb_003935_090 Hb_002232_310--Hb_010705_040 Hb_003109_010 Hb_003109_010 Hb_002232_310--Hb_003109_010 Hb_002232_310--Hb_004109_100 Hb_002232_310--Hb_007574_020 Hb_011360_130--Hb_014497_070 Hb_001501_070 Hb_001501_070 Hb_011360_130--Hb_001501_070 Hb_008406_100 Hb_008406_100 Hb_011360_130--Hb_008406_100 Hb_000441_210 Hb_000441_210 Hb_011360_130--Hb_000441_210 Hb_000367_240 Hb_000367_240 Hb_011360_130--Hb_000367_240 Hb_001478_020 Hb_001478_020 Hb_011360_130--Hb_001478_020 Hb_014497_070--Hb_010705_040 Hb_014497_070--Hb_001755_040 Hb_002205_180 Hb_002205_180 Hb_014497_070--Hb_002205_180 Hb_014497_070--Hb_002232_310 Hb_014497_070--Hb_000441_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.291649 0.0786156 4.33889 1.8638 0.0967885 0.176503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0251489 0.0593614 0.187093 0.0866793 0.50029

CAGE analysis