Hb_002942_150

Information

Type -
Description -
Location Contig2942: 151633-154399
Sequence    

Annotation

kegg
ID rcu:RCOM_1504170
description serine carboxypeptidase, putative (EC:3.4.16.6)
nr
ID XP_002511104.1
description serine carboxypeptidase, putative [Ricinus communis]
swissprot
ID Q93Y09
description Serine carboxypeptidase-like 45 OS=Arabidopsis thaliana GN=SCPL45 PE=2 SV=1
trembl
ID B9RA79
description Serine carboxypeptidase, putative OS=Ricinus communis GN=RCOM_1504170 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_150 0.0 - - serine carboxypeptidase, putative [Ricinus communis]
2 Hb_011457_120 0.1112266718 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
3 Hb_000020_040 0.1767751179 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
4 Hb_007002_050 0.1899882691 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
5 Hb_002443_010 0.1996770638 - - multicopper oxidase, putative [Ricinus communis]
6 Hb_007336_050 0.2006502086 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
7 Hb_002232_310 0.2032592052 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
8 Hb_004079_090 0.2100490199 - - hypothetical protein RCOM_1053120 [Ricinus communis]
9 Hb_003638_040 0.2140535235 - - kinesin heavy chain, putative [Ricinus communis]
10 Hb_059567_010 0.2144656641 - - PREDICTED: transcription factor PAR2-like [Jatropha curcas]
11 Hb_002603_090 0.2164116287 - - PREDICTED: GDSL esterase/lipase CPRD49-like isoform X2 [Populus euphratica]
12 Hb_002851_040 0.2191348197 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
13 Hb_000206_030 0.2221717347 - - PREDICTED: uncharacterized protein LOC105639682 [Jatropha curcas]
14 Hb_003935_090 0.2222394878 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
15 Hb_000120_260 0.222268416 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
16 Hb_007574_020 0.2237510453 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
17 Hb_001755_040 0.2248299658 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
18 Hb_000763_030 0.2261189148 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
19 Hb_010288_030 0.2271759192 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
20 Hb_001279_050 0.2273633663 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]

Gene co-expression network

sample Hb_002942_150 Hb_002942_150 Hb_011457_120 Hb_011457_120 Hb_002942_150--Hb_011457_120 Hb_000020_040 Hb_000020_040 Hb_002942_150--Hb_000020_040 Hb_007002_050 Hb_007002_050 Hb_002942_150--Hb_007002_050 Hb_002443_010 Hb_002443_010 Hb_002942_150--Hb_002443_010 Hb_007336_050 Hb_007336_050 Hb_002942_150--Hb_007336_050 Hb_002232_310 Hb_002232_310 Hb_002942_150--Hb_002232_310 Hb_011457_120--Hb_000020_040 Hb_059567_010 Hb_059567_010 Hb_011457_120--Hb_059567_010 Hb_004093_030 Hb_004093_030 Hb_011457_120--Hb_004093_030 Hb_000206_030 Hb_000206_030 Hb_011457_120--Hb_000206_030 Hb_001266_150 Hb_001266_150 Hb_011457_120--Hb_001266_150 Hb_004079_090 Hb_004079_090 Hb_000020_040--Hb_004079_090 Hb_001755_040 Hb_001755_040 Hb_000020_040--Hb_001755_040 Hb_000020_040--Hb_002232_310 Hb_011360_130 Hb_011360_130 Hb_000020_040--Hb_011360_130 Hb_014497_070 Hb_014497_070 Hb_000020_040--Hb_014497_070 Hb_005162_120 Hb_005162_120 Hb_007002_050--Hb_005162_120 Hb_002221_010 Hb_002221_010 Hb_007002_050--Hb_002221_010 Hb_002007_040 Hb_002007_040 Hb_007002_050--Hb_002007_040 Hb_003638_040 Hb_003638_040 Hb_007002_050--Hb_003638_040 Hb_000028_250 Hb_000028_250 Hb_007002_050--Hb_000028_250 Hb_007002_050--Hb_011360_130 Hb_185494_010 Hb_185494_010 Hb_002443_010--Hb_185494_010 Hb_003541_010 Hb_003541_010 Hb_002443_010--Hb_003541_010 Hb_000347_170 Hb_000347_170 Hb_002443_010--Hb_000347_170 Hb_062773_010 Hb_062773_010 Hb_002443_010--Hb_062773_010 Hb_002540_060 Hb_002540_060 Hb_002443_010--Hb_002540_060 Hb_000816_210 Hb_000816_210 Hb_007336_050--Hb_000816_210 Hb_000438_130 Hb_000438_130 Hb_007336_050--Hb_000438_130 Hb_002603_090 Hb_002603_090 Hb_007336_050--Hb_002603_090 Hb_007336_050--Hb_011457_120 Hb_007336_050--Hb_003638_040 Hb_029510_130 Hb_029510_130 Hb_007336_050--Hb_029510_130 Hb_002232_310--Hb_001755_040 Hb_003935_090 Hb_003935_090 Hb_002232_310--Hb_003935_090 Hb_010705_040 Hb_010705_040 Hb_002232_310--Hb_010705_040 Hb_003109_010 Hb_003109_010 Hb_002232_310--Hb_003109_010 Hb_004109_100 Hb_004109_100 Hb_002232_310--Hb_004109_100 Hb_007574_020 Hb_007574_020 Hb_002232_310--Hb_007574_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.743841 0.0147714 6.5132 1.49157 0.174394 0.0260157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.067594 0.026588 0.298902 0.0106233 0.998239

CAGE analysis