Hb_005162_120

Information

Type -
Description -
Location Contig5162: 85497-88990
Sequence    

Annotation

kegg
ID rcu:RCOM_1582800
description ferric-chelate reductase, putative (EC:1.6.3.1)
nr
ID ADR70891.1
description ferric reductase oxidase [Manihot esculenta]
swissprot
ID Q8W110
description Ferric reduction oxidase 4 OS=Arabidopsis thaliana GN=FRO4 PE=2 SV=1
trembl
ID V9HYU8
description Ferric reductase oxidase OS=Manihot esculenta GN=FRO5 PE=2 SV=1
Gene Ontology
ID GO:0016021
description ferric-chelate reductase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46525: 85532-85686 , PASA_asmbl_46526: 85799-87487 , PASA_asmbl_46527: 87566-89155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005162_120 0.0 - - ferric reductase oxidase [Manihot esculenta]
2 Hb_000115_190 0.1311902691 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
3 Hb_000028_250 0.1339810473 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
4 Hb_002639_170 0.1397556711 - - carboxy-lyase, putative [Ricinus communis]
5 Hb_002218_050 0.1412340062 - - SSXT family protein isoform 2, partial [Theobroma cacao]
6 Hb_007002_050 0.1508831769 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
7 Hb_001241_020 0.150913503 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
8 Hb_001040_050 0.1576090646 - - Stem-specific protein TSJT1, putative [Ricinus communis]
9 Hb_011609_130 0.1606222387 - - -
10 Hb_010288_050 0.1646109948 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
11 Hb_002221_010 0.1660920571 - - PREDICTED: adenylyl-sulfate kinase 3-like [Jatropha curcas]
12 Hb_114292_010 0.1683249385 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000028_240 0.1721978191 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002799_120 0.1737693072 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
15 Hb_000388_040 0.1748983582 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
16 Hb_000264_160 0.1768144596 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
17 Hb_001377_340 0.1771774741 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
18 Hb_007317_100 0.1787929082 - - Peflin, putative [Ricinus communis]
19 Hb_001606_040 0.1827395708 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
20 Hb_000424_050 0.1848525057 - - erecta, putative [Ricinus communis]

Gene co-expression network

sample Hb_005162_120 Hb_005162_120 Hb_000115_190 Hb_000115_190 Hb_005162_120--Hb_000115_190 Hb_000028_250 Hb_000028_250 Hb_005162_120--Hb_000028_250 Hb_002639_170 Hb_002639_170 Hb_005162_120--Hb_002639_170 Hb_002218_050 Hb_002218_050 Hb_005162_120--Hb_002218_050 Hb_007002_050 Hb_007002_050 Hb_005162_120--Hb_007002_050 Hb_001241_020 Hb_001241_020 Hb_005162_120--Hb_001241_020 Hb_001040_050 Hb_001040_050 Hb_000115_190--Hb_001040_050 Hb_000115_190--Hb_000028_250 Hb_006519_020 Hb_006519_020 Hb_000115_190--Hb_006519_020 Hb_002447_060 Hb_002447_060 Hb_000115_190--Hb_002447_060 Hb_000388_040 Hb_000388_040 Hb_000115_190--Hb_000388_040 Hb_001377_340 Hb_001377_340 Hb_000028_250--Hb_001377_340 Hb_001755_040 Hb_001755_040 Hb_000028_250--Hb_001755_040 Hb_000028_250--Hb_000388_040 Hb_003767_030 Hb_003767_030 Hb_000028_250--Hb_003767_030 Hb_011609_130 Hb_011609_130 Hb_002639_170--Hb_011609_130 Hb_000261_530 Hb_000261_530 Hb_002639_170--Hb_000261_530 Hb_010288_050 Hb_010288_050 Hb_002639_170--Hb_010288_050 Hb_002639_170--Hb_001241_020 Hb_007317_100 Hb_007317_100 Hb_002639_170--Hb_007317_100 Hb_002218_050--Hb_000388_040 Hb_114292_010 Hb_114292_010 Hb_002218_050--Hb_114292_010 Hb_002218_050--Hb_001040_050 Hb_001143_200 Hb_001143_200 Hb_002218_050--Hb_001143_200 Hb_002218_050--Hb_000115_190 Hb_002221_010 Hb_002221_010 Hb_007002_050--Hb_002221_010 Hb_002007_040 Hb_002007_040 Hb_007002_050--Hb_002007_040 Hb_003638_040 Hb_003638_040 Hb_007002_050--Hb_003638_040 Hb_007002_050--Hb_000028_250 Hb_011360_130 Hb_011360_130 Hb_007002_050--Hb_011360_130 Hb_000243_180 Hb_000243_180 Hb_001241_020--Hb_000243_180 Hb_001241_020--Hb_011609_130 Hb_001926_010 Hb_001926_010 Hb_001241_020--Hb_001926_010 Hb_006909_050 Hb_006909_050 Hb_001241_020--Hb_006909_050 Hb_000731_030 Hb_000731_030 Hb_001241_020--Hb_000731_030 Hb_000028_010 Hb_000028_010 Hb_001241_020--Hb_000028_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0478321 0.277939 6.48133 0.868509 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.152155 0.376268 0.032462 0.0544177 0.615068

CAGE analysis