Hb_002639_170

Information

Type -
Description -
Location Contig2639: 151999-153557
Sequence    

Annotation

kegg
ID rcu:RCOM_1600480
description carboxy-lyase, putative
nr
ID XP_002510643.1
description carboxy-lyase, putative [Ricinus communis]
swissprot
ID Q8LBB7
description Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5 OS=Arabidopsis thaliana GN=LOG5 PE=1 SV=1
trembl
ID B9R8K0
description Carboxy-lyase, putative OS=Ricinus communis GN=RCOM_1600480 PE=4 SV=1
Gene Ontology
ID GO:0016829
description cytokinin riboside 5 -monophosphate phosphoribohydrolase log5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27576: 152209-154476 , PASA_asmbl_27577: 152209-153860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002639_170 0.0 - - carboxy-lyase, putative [Ricinus communis]
2 Hb_005162_120 0.1397556711 - - ferric reductase oxidase [Manihot esculenta]
3 Hb_011609_130 0.1684288512 - - -
4 Hb_000261_530 0.1746347053 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
5 Hb_010288_050 0.1921771206 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
6 Hb_001241_020 0.1940955778 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
7 Hb_007317_100 0.1942887683 - - Peflin, putative [Ricinus communis]
8 Hb_000668_100 0.1994218521 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
9 Hb_003401_010 0.2003875155 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
10 Hb_002799_120 0.2017240524 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
11 Hb_000732_110 0.2040426097 - - hypothetical protein JCGZ_21339 [Jatropha curcas]
12 Hb_007002_050 0.2271405863 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
13 Hb_000483_270 0.2315625345 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
14 Hb_000264_160 0.2352459198 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
15 Hb_002218_050 0.2371349846 - - SSXT family protein isoform 2, partial [Theobroma cacao]
16 Hb_000731_030 0.2377578257 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
17 Hb_000497_240 0.2391235705 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
18 Hb_000028_250 0.2410572228 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
19 Hb_000500_330 0.2424908494 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
20 Hb_001123_340 0.244016035 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_002639_170 Hb_002639_170 Hb_005162_120 Hb_005162_120 Hb_002639_170--Hb_005162_120 Hb_011609_130 Hb_011609_130 Hb_002639_170--Hb_011609_130 Hb_000261_530 Hb_000261_530 Hb_002639_170--Hb_000261_530 Hb_010288_050 Hb_010288_050 Hb_002639_170--Hb_010288_050 Hb_001241_020 Hb_001241_020 Hb_002639_170--Hb_001241_020 Hb_007317_100 Hb_007317_100 Hb_002639_170--Hb_007317_100 Hb_000115_190 Hb_000115_190 Hb_005162_120--Hb_000115_190 Hb_000028_250 Hb_000028_250 Hb_005162_120--Hb_000028_250 Hb_002218_050 Hb_002218_050 Hb_005162_120--Hb_002218_050 Hb_007002_050 Hb_007002_050 Hb_005162_120--Hb_007002_050 Hb_005162_120--Hb_001241_020 Hb_011609_130--Hb_001241_020 Hb_000732_110 Hb_000732_110 Hb_011609_130--Hb_000732_110 Hb_011609_130--Hb_005162_120 Hb_000028_010 Hb_000028_010 Hb_011609_130--Hb_000028_010 Hb_002799_120 Hb_002799_120 Hb_011609_130--Hb_002799_120 Hb_000261_530--Hb_010288_050 Hb_006788_090 Hb_006788_090 Hb_000261_530--Hb_006788_090 Hb_000261_530--Hb_005162_120 Hb_000261_530--Hb_011609_130 Hb_000261_530--Hb_002799_120 Hb_002693_040 Hb_002693_040 Hb_010288_050--Hb_002693_040 Hb_007632_200 Hb_007632_200 Hb_010288_050--Hb_007632_200 Hb_000165_270 Hb_000165_270 Hb_010288_050--Hb_000165_270 Hb_010288_050--Hb_005162_120 Hb_008948_090 Hb_008948_090 Hb_010288_050--Hb_008948_090 Hb_006909_050 Hb_006909_050 Hb_010288_050--Hb_006909_050 Hb_000243_180 Hb_000243_180 Hb_001241_020--Hb_000243_180 Hb_001926_010 Hb_001926_010 Hb_001241_020--Hb_001926_010 Hb_001241_020--Hb_006909_050 Hb_000731_030 Hb_000731_030 Hb_001241_020--Hb_000731_030 Hb_001241_020--Hb_000028_010 Hb_002843_130 Hb_002843_130 Hb_007317_100--Hb_002843_130 Hb_007317_100--Hb_002799_120 Hb_000483_270 Hb_000483_270 Hb_007317_100--Hb_000483_270 Hb_000152_650 Hb_000152_650 Hb_007317_100--Hb_000152_650 Hb_000264_160 Hb_000264_160 Hb_007317_100--Hb_000264_160 Hb_000961_060 Hb_000961_060 Hb_007317_100--Hb_000961_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.655608 21.9589 1.439 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14098 2.33229 0 0.121431 2.85378

CAGE analysis