Hb_008948_090

Information

Type transcription factor
Description TF Family: ERF
Location Contig8948: 103524-104325
Sequence    

Annotation

kegg
ID rcu:RCOM_0224000
description DNA binding protein, putative
nr
ID XP_002524500.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9XI33
description Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1
trembl
ID B9SET1
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0224000 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor win1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61725: 103492-104613
cDNA
(Sanger)
(ID:Location)		 001_N01.ab1: 103606-104526 , 002_D23.ab1: 103606-104552 , 013_L05.ab1: 103606-104447 , 014_N24.ab1: 103606-104444

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008948_090 0.0 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
2 Hb_001061_010 0.1396469179 - - PREDICTED: uncharacterized protein LOC100243595 [Vitis vinifera]
3 Hb_006909_050 0.1450987354 transcription factor TF Family: OFP hypothetical protein POPTR_0008s01840g [Populus trichocarpa]
4 Hb_177533_010 0.1520631449 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
5 Hb_001519_080 0.1548123849 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
6 Hb_004881_040 0.1583680324 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
7 Hb_000592_120 0.1625044422 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
8 Hb_010288_050 0.1664823974 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
9 Hb_000544_150 0.1668098534 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
10 Hb_008642_020 0.1669240107 - - sterol desaturase, putative [Ricinus communis]
11 Hb_007741_010 0.1689497834 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
12 Hb_002221_010 0.1702602277 - - PREDICTED: adenylyl-sulfate kinase 3-like [Jatropha curcas]
13 Hb_000152_200 0.1704472522 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
14 Hb_000731_030 0.1710541622 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_007558_060 0.1712758614 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
16 Hb_000005_160 0.1715657878 - - tonoplast intrinsic protein, putative [Ricinus communis]
17 Hb_005550_060 0.171859737 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
18 Hb_000190_200 0.173169514 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
19 Hb_000329_220 0.173334063 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
20 Hb_001102_030 0.1749259638 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]

Gene co-expression network

sample Hb_008948_090 Hb_008948_090 Hb_001061_010 Hb_001061_010 Hb_008948_090--Hb_001061_010 Hb_006909_050 Hb_006909_050 Hb_008948_090--Hb_006909_050 Hb_177533_010 Hb_177533_010 Hb_008948_090--Hb_177533_010 Hb_001519_080 Hb_001519_080 Hb_008948_090--Hb_001519_080 Hb_004881_040 Hb_004881_040 Hb_008948_090--Hb_004881_040 Hb_000592_120 Hb_000592_120 Hb_008948_090--Hb_000592_120 Hb_001061_010--Hb_001519_080 Hb_008642_020 Hb_008642_020 Hb_001061_010--Hb_008642_020 Hb_001952_100 Hb_001952_100 Hb_001061_010--Hb_001952_100 Hb_007558_060 Hb_007558_060 Hb_001061_010--Hb_007558_060 Hb_000005_390 Hb_000005_390 Hb_001061_010--Hb_000005_390 Hb_011218_020 Hb_011218_020 Hb_001061_010--Hb_011218_020 Hb_006909_050--Hb_177533_010 Hb_000243_180 Hb_000243_180 Hb_006909_050--Hb_000243_180 Hb_002045_020 Hb_002045_020 Hb_006909_050--Hb_002045_020 Hb_000023_030 Hb_000023_030 Hb_006909_050--Hb_000023_030 Hb_006909_050--Hb_007558_060 Hb_000731_030 Hb_000731_030 Hb_006909_050--Hb_000731_030 Hb_000152_200 Hb_000152_200 Hb_177533_010--Hb_000152_200 Hb_000005_160 Hb_000005_160 Hb_177533_010--Hb_000005_160 Hb_005198_010 Hb_005198_010 Hb_177533_010--Hb_005198_010 Hb_000556_050 Hb_000556_050 Hb_177533_010--Hb_000556_050 Hb_007741_010 Hb_007741_010 Hb_177533_010--Hb_007741_010 Hb_001519_080--Hb_008642_020 Hb_001519_080--Hb_007558_060 Hb_005170_050 Hb_005170_050 Hb_001519_080--Hb_005170_050 Hb_005550_060 Hb_005550_060 Hb_001519_080--Hb_005550_060 Hb_001519_080--Hb_000005_390 Hb_000505_030 Hb_000505_030 Hb_001519_080--Hb_000505_030 Hb_000190_200 Hb_000190_200 Hb_004881_040--Hb_000190_200 Hb_000544_150 Hb_000544_150 Hb_004881_040--Hb_000544_150 Hb_162008_020 Hb_162008_020 Hb_004881_040--Hb_162008_020 Hb_000329_220 Hb_000329_220 Hb_004881_040--Hb_000329_220 Hb_007157_050 Hb_007157_050 Hb_004881_040--Hb_007157_050 Hb_008252_010 Hb_008252_010 Hb_004881_040--Hb_008252_010 Hb_000212_170 Hb_000212_170 Hb_000592_120--Hb_000212_170 Hb_162008_040 Hb_162008_040 Hb_000592_120--Hb_162008_040 Hb_121680_010 Hb_121680_010 Hb_000592_120--Hb_121680_010 Hb_000592_120--Hb_008252_010 Hb_000592_120--Hb_162008_020 Hb_000077_430 Hb_000077_430 Hb_000592_120--Hb_000077_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0347 0.133154 63.7145 4.11995 0 0.633079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.433851 0.409246 1.33088 0.055631 2.68073

CAGE analysis