Hb_007317_100

Information

Type -
Description -
Location Contig7317: 76120-78531
Sequence    

Annotation

kegg
ID rcu:RCOM_1281660
description Peflin, putative
nr
ID XP_002523812.1
description Peflin, putative [Ricinus communis]
swissprot
ID Q9UBV8
description Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1
trembl
ID B9SCU3
description Peflin, putative OS=Ricinus communis GN=RCOM_1281660 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml48

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56054: 79187-85669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_100 0.0 - - Peflin, putative [Ricinus communis]
2 Hb_002843_130 0.0941718326 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]
3 Hb_002799_120 0.0997823531 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
4 Hb_000483_270 0.1253609017 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
5 Hb_000152_650 0.1388977713 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
6 Hb_000264_160 0.139981817 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
7 Hb_000961_060 0.1433972259 - - uvb-resistance protein uvr8, putative [Ricinus communis]
8 Hb_163950_090 0.1482001851 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
9 Hb_003387_010 0.1524203595 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
10 Hb_002499_050 0.1526453758 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_054615_010 0.1531808738 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
12 Hb_000347_170 0.1556517357 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
13 Hb_089736_010 0.1574810432 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
14 Hb_000574_380 0.1578080878 - - hydrolase, putative [Ricinus communis]
15 Hb_000084_210 0.1582690239 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
16 Hb_001439_160 0.1582698462 - - PREDICTED: uncharacterized protein LOC105644097 [Jatropha curcas]
17 Hb_001123_340 0.158361201 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
18 Hb_000494_010 0.1584245974 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
19 Hb_006649_100 0.1592982883 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
20 Hb_000107_580 0.159376424 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]

Gene co-expression network

sample Hb_007317_100 Hb_007317_100 Hb_002843_130 Hb_002843_130 Hb_007317_100--Hb_002843_130 Hb_002799_120 Hb_002799_120 Hb_007317_100--Hb_002799_120 Hb_000483_270 Hb_000483_270 Hb_007317_100--Hb_000483_270 Hb_000152_650 Hb_000152_650 Hb_007317_100--Hb_000152_650 Hb_000264_160 Hb_000264_160 Hb_007317_100--Hb_000264_160 Hb_000961_060 Hb_000961_060 Hb_007317_100--Hb_000961_060 Hb_163950_090 Hb_163950_090 Hb_002843_130--Hb_163950_090 Hb_000358_160 Hb_000358_160 Hb_002843_130--Hb_000358_160 Hb_000123_360 Hb_000123_360 Hb_002843_130--Hb_000123_360 Hb_002843_130--Hb_000483_270 Hb_005116_130 Hb_005116_130 Hb_002843_130--Hb_005116_130 Hb_006649_100 Hb_006649_100 Hb_002799_120--Hb_006649_100 Hb_002799_120--Hb_000264_160 Hb_000347_170 Hb_000347_170 Hb_002799_120--Hb_000347_170 Hb_005375_100 Hb_005375_100 Hb_002799_120--Hb_005375_100 Hb_000574_380 Hb_000574_380 Hb_002799_120--Hb_000574_380 Hb_000483_270--Hb_000123_360 Hb_000483_270--Hb_000961_060 Hb_002078_120 Hb_002078_120 Hb_000483_270--Hb_002078_120 Hb_000500_330 Hb_000500_330 Hb_000483_270--Hb_000500_330 Hb_002121_030 Hb_002121_030 Hb_000152_650--Hb_002121_030 Hb_000152_650--Hb_000264_160 Hb_001369_590 Hb_001369_590 Hb_000152_650--Hb_001369_590 Hb_054615_010 Hb_054615_010 Hb_000152_650--Hb_054615_010 Hb_104014_010 Hb_104014_010 Hb_000152_650--Hb_104014_010 Hb_005365_040 Hb_005365_040 Hb_000152_650--Hb_005365_040 Hb_001123_340 Hb_001123_340 Hb_000264_160--Hb_001123_340 Hb_000431_080 Hb_000431_080 Hb_000264_160--Hb_000431_080 Hb_003077_010 Hb_003077_010 Hb_000264_160--Hb_003077_010 Hb_000264_160--Hb_005365_040 Hb_000264_160--Hb_104014_010 Hb_000961_060--Hb_002843_130 Hb_000961_060--Hb_000123_360 Hb_003517_110 Hb_003517_110 Hb_000961_060--Hb_003517_110 Hb_001135_070 Hb_001135_070 Hb_000961_060--Hb_001135_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.16708 6.18511 0.93911 0 0.0441153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.157428 0.185647 0 0.100627 1.71758

CAGE analysis