Hb_002078_120

Information

Type -
Description -
Location Contig2078: 70121-71891
Sequence    

Annotation

kegg
ID rcu:RCOM_1080740
description Protein AFR, putative
nr
ID XP_012085660.1
description PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
swissprot
ID Q9CAG8
description F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1
trembl
ID A0A067JVH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17946 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box kelch-repeat protein at1g67480-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21414: 70014-70742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_120 0.0 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
2 Hb_002045_090 0.1358046311 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
3 Hb_003397_030 0.138025391 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
4 Hb_000000_180 0.1400859217 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
5 Hb_001386_090 0.1426864454 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
6 Hb_029510_130 0.1486414006 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
7 Hb_000483_270 0.1499910055 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
8 Hb_002942_120 0.1512496479 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
9 Hb_004517_030 0.1548204778 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003638_040 0.1554937977 - - kinesin heavy chain, putative [Ricinus communis]
11 Hb_038044_010 0.1576575342 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
12 Hb_004195_140 0.1587615883 - - Sec14 cytosolic factor, putative [Ricinus communis]
13 Hb_001501_070 0.161684586 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
14 Hb_054865_010 0.1619298676 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
15 Hb_005504_040 0.162712479 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000230_190 0.1633438735 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
17 Hb_007943_180 0.1661462073 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
18 Hb_000169_070 0.1675865009 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
19 Hb_000139_280 0.1678168506 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
20 Hb_012545_040 0.1753263377 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002078_120 Hb_002078_120 Hb_002045_090 Hb_002045_090 Hb_002078_120--Hb_002045_090 Hb_003397_030 Hb_003397_030 Hb_002078_120--Hb_003397_030 Hb_000000_180 Hb_000000_180 Hb_002078_120--Hb_000000_180 Hb_001386_090 Hb_001386_090 Hb_002078_120--Hb_001386_090 Hb_029510_130 Hb_029510_130 Hb_002078_120--Hb_029510_130 Hb_000483_270 Hb_000483_270 Hb_002078_120--Hb_000483_270 Hb_004195_140 Hb_004195_140 Hb_002045_090--Hb_004195_140 Hb_003640_050 Hb_003640_050 Hb_002045_090--Hb_003640_050 Hb_000958_120 Hb_000958_120 Hb_002045_090--Hb_000958_120 Hb_002045_090--Hb_003397_030 Hb_001141_050 Hb_001141_050 Hb_002045_090--Hb_001141_050 Hb_000224_080 Hb_000224_080 Hb_002045_090--Hb_000224_080 Hb_003397_030--Hb_001386_090 Hb_000169_070 Hb_000169_070 Hb_003397_030--Hb_000169_070 Hb_001711_060 Hb_001711_060 Hb_003397_030--Hb_001711_060 Hb_004517_030 Hb_004517_030 Hb_003397_030--Hb_004517_030 Hb_000792_050 Hb_000792_050 Hb_003397_030--Hb_000792_050 Hb_000438_130 Hb_000438_130 Hb_003397_030--Hb_000438_130 Hb_012545_040 Hb_012545_040 Hb_000000_180--Hb_012545_040 Hb_001519_170 Hb_001519_170 Hb_000000_180--Hb_001519_170 Hb_000146_030 Hb_000146_030 Hb_000000_180--Hb_000146_030 Hb_011114_020 Hb_011114_020 Hb_000000_180--Hb_011114_020 Hb_000000_180--Hb_001711_060 Hb_004459_060 Hb_004459_060 Hb_000000_180--Hb_004459_060 Hb_001386_090--Hb_000438_130 Hb_001386_090--Hb_001711_060 Hb_001386_090--Hb_000169_070 Hb_001386_090--Hb_004517_030 Hb_000392_450 Hb_000392_450 Hb_001386_090--Hb_000392_450 Hb_038044_010 Hb_038044_010 Hb_029510_130--Hb_038044_010 Hb_001501_070 Hb_001501_070 Hb_029510_130--Hb_001501_070 Hb_001478_020 Hb_001478_020 Hb_029510_130--Hb_001478_020 Hb_010180_030 Hb_010180_030 Hb_029510_130--Hb_010180_030 Hb_002007_280 Hb_002007_280 Hb_029510_130--Hb_002007_280 Hb_024973_020 Hb_024973_020 Hb_029510_130--Hb_024973_020 Hb_007317_100 Hb_007317_100 Hb_000483_270--Hb_007317_100 Hb_002843_130 Hb_002843_130 Hb_000483_270--Hb_002843_130 Hb_000123_360 Hb_000123_360 Hb_000483_270--Hb_000123_360 Hb_000961_060 Hb_000961_060 Hb_000483_270--Hb_000961_060 Hb_000500_330 Hb_000500_330 Hb_000483_270--Hb_000500_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43253 2.22677 48.5975 13.2124 0.957822 1.58469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.89151 4.76122 2.72004 2.41373 13.2587

CAGE analysis