Hb_004195_140

Information

Type -
Description -
Location Contig4195: 143585-150216
Sequence    

Annotation

kegg
ID rcu:RCOM_0534520
description Sec14 cytosolic factor, putative
nr
ID XP_002521526.1
description Sec14 cytosolic factor, putative [Ricinus communis]
swissprot
ID Q9SI13
description Phosphatidylinositol/phosphatidylcholine transfer protein SFH10 OS=Arabidopsis thaliana GN=SFH10 PE=3 SV=1
trembl
ID B9S6A7
description Sec14 cytosolic factor, putative OS=Ricinus communis GN=RCOM_0534520 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phosphatidylinositol phosphatidylcholine transfer protein sfh12-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41425: 143251-143475 , PASA_asmbl_41426: 145480-147255
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_140 0.0 - - Sec14 cytosolic factor, putative [Ricinus communis]
2 Hb_002045_090 0.1110391562 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
3 Hb_000230_190 0.1304018858 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
4 Hb_001377_530 0.135843202 - - NC domain-containing family protein [Populus trichocarpa]
5 Hb_001141_050 0.1429098602 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
6 Hb_000792_050 0.1520305832 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_002942_120 0.1524375872 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
8 Hb_000359_200 0.1564746309 - - triacylglycerol lipase, putative [Ricinus communis]
9 Hb_004163_030 0.1570050145 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
10 Hb_003398_040 0.1575045093 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
11 Hb_002078_120 0.1587615883 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
12 Hb_005527_060 0.1636311285 - - malic enzyme, putative [Ricinus communis]
13 Hb_004650_030 0.1640662927 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
14 Hb_003397_030 0.1655596152 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
15 Hb_000032_200 0.1657199878 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
16 Hb_005271_140 0.1664576035 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
17 Hb_001198_080 0.1671682298 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
18 Hb_000088_240 0.1677617159 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
19 Hb_001922_110 0.1680937268 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006970_130 0.1689596058 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]

Gene co-expression network

sample Hb_004195_140 Hb_004195_140 Hb_002045_090 Hb_002045_090 Hb_004195_140--Hb_002045_090 Hb_000230_190 Hb_000230_190 Hb_004195_140--Hb_000230_190 Hb_001377_530 Hb_001377_530 Hb_004195_140--Hb_001377_530 Hb_001141_050 Hb_001141_050 Hb_004195_140--Hb_001141_050 Hb_000792_050 Hb_000792_050 Hb_004195_140--Hb_000792_050 Hb_002942_120 Hb_002942_120 Hb_004195_140--Hb_002942_120 Hb_003640_050 Hb_003640_050 Hb_002045_090--Hb_003640_050 Hb_000958_120 Hb_000958_120 Hb_002045_090--Hb_000958_120 Hb_003397_030 Hb_003397_030 Hb_002045_090--Hb_003397_030 Hb_002045_090--Hb_001141_050 Hb_000224_080 Hb_000224_080 Hb_002045_090--Hb_000224_080 Hb_006133_020 Hb_006133_020 Hb_000230_190--Hb_006133_020 Hb_000230_190--Hb_001141_050 Hb_003020_190 Hb_003020_190 Hb_000230_190--Hb_003020_190 Hb_000230_190--Hb_001377_530 Hb_000230_190--Hb_000958_120 Hb_000069_300 Hb_000069_300 Hb_000230_190--Hb_000069_300 Hb_003050_360 Hb_003050_360 Hb_001377_530--Hb_003050_360 Hb_002641_120 Hb_002641_120 Hb_001377_530--Hb_002641_120 Hb_003398_040 Hb_003398_040 Hb_001377_530--Hb_003398_040 Hb_001123_310 Hb_001123_310 Hb_001377_530--Hb_001123_310 Hb_003299_020 Hb_003299_020 Hb_001377_530--Hb_003299_020 Hb_001408_170 Hb_001408_170 Hb_001377_530--Hb_001408_170 Hb_001922_110 Hb_001922_110 Hb_001141_050--Hb_001922_110 Hb_000032_410 Hb_000032_410 Hb_001141_050--Hb_000032_410 Hb_000032_200 Hb_000032_200 Hb_001141_050--Hb_000032_200 Hb_001141_050--Hb_006133_020 Hb_000076_250 Hb_000076_250 Hb_001141_050--Hb_000076_250 Hb_001141_050--Hb_003640_050 Hb_000792_050--Hb_001922_110 Hb_000227_400 Hb_000227_400 Hb_000792_050--Hb_000227_400 Hb_000792_050--Hb_001141_050 Hb_003160_070 Hb_003160_070 Hb_000792_050--Hb_003160_070 Hb_000792_050--Hb_003397_030 Hb_000996_080 Hb_000996_080 Hb_000792_050--Hb_000996_080 Hb_004218_050 Hb_004218_050 Hb_002942_120--Hb_004218_050 Hb_004846_230 Hb_004846_230 Hb_002942_120--Hb_004846_230 Hb_038044_010 Hb_038044_010 Hb_002942_120--Hb_038044_010 Hb_005527_060 Hb_005527_060 Hb_002942_120--Hb_005527_060 Hb_021346_050 Hb_021346_050 Hb_002942_120--Hb_021346_050 Hb_007943_180 Hb_007943_180 Hb_002942_120--Hb_007943_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.17563 0.25435 2.18414 0.889636 0 0.124582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.293702 0.14705 0.158639 0.318088 0.618535

CAGE analysis