Hb_000224_080

Information

Type -
Description -
Location Contig224: 58872-60982
Sequence    

Annotation

kegg
ID rcu:RCOM_0510880
description hypothetical protein
nr
ID XP_002528945.1
description hypothetical protein RCOM_0510880 [Ricinus communis]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID B9SSH6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0510880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23287: 58753-60973 , PASA_asmbl_23288: 59001-59711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000224_080 0.0 - - hypothetical protein RCOM_0510880 [Ricinus communis]
2 Hb_002045_090 0.1299413381 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
3 Hb_014320_010 0.1491745809 - - PREDICTED: uncharacterized protein LOC105629932 [Jatropha curcas]
4 Hb_001123_110 0.1612893934 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003397_030 0.1657893085 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
6 Hb_000958_120 0.1663739706 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
7 Hb_005271_140 0.166556404 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
8 Hb_001141_050 0.1669200741 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
9 Hb_001268_160 0.1670424562 - - Glycerophosphodiester phosphodiesterase [Medicago truncatula]
10 Hb_000996_080 0.1678156834 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
11 Hb_000076_250 0.1726341957 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003640_050 0.1733335383 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_000792_050 0.1743275522 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000227_400 0.1761051053 - - lipoxygenase, putative [Ricinus communis]
15 Hb_004195_140 0.1763015009 - - Sec14 cytosolic factor, putative [Ricinus communis]
16 Hb_000230_190 0.1766541901 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
17 Hb_003160_070 0.1770190769 - - PREDICTED: VIN3-like protein 1 [Jatropha curcas]
18 Hb_005144_120 0.1786466601 - - PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Jatropha curcas]
19 Hb_002701_070 0.1788763243 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
20 Hb_000206_030 0.1792861818 - - PREDICTED: uncharacterized protein LOC105639682 [Jatropha curcas]

Gene co-expression network

sample Hb_000224_080 Hb_000224_080 Hb_002045_090 Hb_002045_090 Hb_000224_080--Hb_002045_090 Hb_014320_010 Hb_014320_010 Hb_000224_080--Hb_014320_010 Hb_001123_110 Hb_001123_110 Hb_000224_080--Hb_001123_110 Hb_003397_030 Hb_003397_030 Hb_000224_080--Hb_003397_030 Hb_000958_120 Hb_000958_120 Hb_000224_080--Hb_000958_120 Hb_005271_140 Hb_005271_140 Hb_000224_080--Hb_005271_140 Hb_004195_140 Hb_004195_140 Hb_002045_090--Hb_004195_140 Hb_003640_050 Hb_003640_050 Hb_002045_090--Hb_003640_050 Hb_002045_090--Hb_000958_120 Hb_002045_090--Hb_003397_030 Hb_001141_050 Hb_001141_050 Hb_002045_090--Hb_001141_050 Hb_000340_410 Hb_000340_410 Hb_014320_010--Hb_000340_410 Hb_188063_030 Hb_188063_030 Hb_014320_010--Hb_188063_030 Hb_003160_070 Hb_003160_070 Hb_014320_010--Hb_003160_070 Hb_160256_010 Hb_160256_010 Hb_014320_010--Hb_160256_010 Hb_000920_010 Hb_000920_010 Hb_014320_010--Hb_000920_010 Hb_119583_020 Hb_119583_020 Hb_001123_110--Hb_119583_020 Hb_000959_190 Hb_000959_190 Hb_001123_110--Hb_000959_190 Hb_002498_240 Hb_002498_240 Hb_001123_110--Hb_002498_240 Hb_005511_130 Hb_005511_130 Hb_001123_110--Hb_005511_130 Hb_000984_220 Hb_000984_220 Hb_001123_110--Hb_000984_220 Hb_001160_110 Hb_001160_110 Hb_001123_110--Hb_001160_110 Hb_001386_090 Hb_001386_090 Hb_003397_030--Hb_001386_090 Hb_000169_070 Hb_000169_070 Hb_003397_030--Hb_000169_070 Hb_001711_060 Hb_001711_060 Hb_003397_030--Hb_001711_060 Hb_004517_030 Hb_004517_030 Hb_003397_030--Hb_004517_030 Hb_000792_050 Hb_000792_050 Hb_003397_030--Hb_000792_050 Hb_000438_130 Hb_000438_130 Hb_003397_030--Hb_000438_130 Hb_001922_110 Hb_001922_110 Hb_000958_120--Hb_001922_110 Hb_002701_070 Hb_002701_070 Hb_000958_120--Hb_002701_070 Hb_000227_400 Hb_000227_400 Hb_000958_120--Hb_000227_400 Hb_000322_030 Hb_000322_030 Hb_000958_120--Hb_000322_030 Hb_000390_210 Hb_000390_210 Hb_000958_120--Hb_000390_210 Hb_001544_050 Hb_001544_050 Hb_000958_120--Hb_001544_050 Hb_006970_130 Hb_006970_130 Hb_005271_140--Hb_006970_130 Hb_001232_090 Hb_001232_090 Hb_005271_140--Hb_001232_090 Hb_010534_020 Hb_010534_020 Hb_005271_140--Hb_010534_020 Hb_000684_120 Hb_000684_120 Hb_005271_140--Hb_000684_120 Hb_000757_130 Hb_000757_130 Hb_005271_140--Hb_000757_130 Hb_000563_440 Hb_000563_440 Hb_005271_140--Hb_000563_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.10193 2.78971 25.8192 14.4072 0.835818 0.685667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.89234 2.7887 0.63066 2.13488 10.6303

CAGE analysis