Hb_188063_030

Information

Type -
Description -
Location Contig188063: 23470-29381
Sequence    

Annotation

kegg
ID rcu:RCOM_1469450
description hypothetical protein
nr
ID XP_012080399.1
description PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
swissprot
ID Q9S823
description Protein LONGIFOLIA 2 OS=Arabidopsis thaliana GN=LNG2 PE=1 SV=1
trembl
ID A0A067K5G5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11738 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18559: 22734-26046 , PASA_asmbl_18561: 26992-27796 , PASA_asmbl_18562: 27798-29177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188063_030 0.0 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
2 Hb_000340_410 0.1039254275 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
3 Hb_014320_010 0.1378316689 - - PREDICTED: uncharacterized protein LOC105629932 [Jatropha curcas]
4 Hb_002498_170 0.1551310239 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
5 Hb_001597_020 0.1592299064 - - PREDICTED: uncharacterized protein LOC105629846 isoform X2 [Jatropha curcas]
6 Hb_006252_030 0.1636810303 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
7 Hb_000322_040 0.1754723676 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
8 Hb_004705_070 0.1835736573 - - PREDICTED: uncharacterized protein LOC105647312 isoform X1 [Jatropha curcas]
9 Hb_000169_070 0.1863251945 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
10 Hb_150651_020 0.1931243021 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
11 Hb_173660_010 0.196648766 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]
12 Hb_000866_340 0.197167219 - - DNA binding protein, putative [Ricinus communis]
13 Hb_005479_010 0.1992842609 - - PREDICTED: uncharacterized protein LOC105111002 [Populus euphratica]
14 Hb_000260_590 0.1996123677 - - electron transporter, putative [Ricinus communis]
15 Hb_004052_070 0.2020006794 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
16 Hb_001793_020 0.2022801631 - - PREDICTED: uncharacterized protein LOC105628624 [Jatropha curcas]
17 Hb_003160_070 0.2025513882 - - PREDICTED: VIN3-like protein 1 [Jatropha curcas]
18 Hb_003683_030 0.2029578952 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
19 Hb_000224_080 0.203307801 - - hypothetical protein RCOM_0510880 [Ricinus communis]
20 Hb_010683_030 0.2035147646 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_188063_030 Hb_188063_030 Hb_000340_410 Hb_000340_410 Hb_188063_030--Hb_000340_410 Hb_014320_010 Hb_014320_010 Hb_188063_030--Hb_014320_010 Hb_002498_170 Hb_002498_170 Hb_188063_030--Hb_002498_170 Hb_001597_020 Hb_001597_020 Hb_188063_030--Hb_001597_020 Hb_006252_030 Hb_006252_030 Hb_188063_030--Hb_006252_030 Hb_000322_040 Hb_000322_040 Hb_188063_030--Hb_000322_040 Hb_000340_410--Hb_002498_170 Hb_000340_410--Hb_014320_010 Hb_000340_410--Hb_006252_030 Hb_006846_160 Hb_006846_160 Hb_000340_410--Hb_006846_160 Hb_000340_410--Hb_000322_040 Hb_003160_070 Hb_003160_070 Hb_014320_010--Hb_003160_070 Hb_000224_080 Hb_000224_080 Hb_014320_010--Hb_000224_080 Hb_160256_010 Hb_160256_010 Hb_014320_010--Hb_160256_010 Hb_000920_010 Hb_000920_010 Hb_014320_010--Hb_000920_010 Hb_002498_170--Hb_006846_160 Hb_002498_170--Hb_006252_030 Hb_004052_070 Hb_004052_070 Hb_002498_170--Hb_004052_070 Hb_006618_070 Hb_006618_070 Hb_002498_170--Hb_006618_070 Hb_002498_170--Hb_000322_040 Hb_150651_020 Hb_150651_020 Hb_001597_020--Hb_150651_020 Hb_004705_070 Hb_004705_070 Hb_001597_020--Hb_004705_070 Hb_001001_120 Hb_001001_120 Hb_001597_020--Hb_001001_120 Hb_009692_040 Hb_009692_040 Hb_001597_020--Hb_009692_040 Hb_164926_010 Hb_164926_010 Hb_001597_020--Hb_164926_010 Hb_001365_030 Hb_001365_030 Hb_001597_020--Hb_001365_030 Hb_006252_030--Hb_000322_040 Hb_000056_310 Hb_000056_310 Hb_006252_030--Hb_000056_310 Hb_000169_070 Hb_000169_070 Hb_006252_030--Hb_000169_070 Hb_005618_080 Hb_005618_080 Hb_006252_030--Hb_005618_080 Hb_000749_200 Hb_000749_200 Hb_006252_030--Hb_000749_200 Hb_000934_260 Hb_000934_260 Hb_000322_040--Hb_000934_260 Hb_000322_040--Hb_000056_310 Hb_004208_090 Hb_004208_090 Hb_000322_040--Hb_004208_090 Hb_000146_030 Hb_000146_030 Hb_000322_040--Hb_000146_030 Hb_000802_050 Hb_000802_050 Hb_000322_040--Hb_000802_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35217 0.775476 11.3899 5.45575 1.32006 1.46083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.83982 0.214095 0.142867 0.645442 8.44775

CAGE analysis