Hb_001001_120

Information

Type -
Description -
Location Contig1001: 114228-123148
Sequence    

Annotation

kegg
ID rcu:RCOM_1591100
description protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002510242.1
description protein phosphatase, putative [Ricinus communis]
swissprot
ID Q9FX08
description Probable protein phosphatase 2C 12 OS=Arabidopsis thaliana GN=At1g47380 PE=2 SV=1
trembl
ID B9R7E9
description Protein phosphatase, putative OS=Ricinus communis GN=RCOM_1591100 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable protein phosphatase 2c 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00226: 114321-117618 , PASA_asmbl_00227: 118150-118462 , PASA_asmbl_00228: 119259-119466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001001_120 0.0 - - protein phosphatase, putative [Ricinus communis]
2 Hb_150651_020 0.0871861869 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_001365_030 0.1175093888 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
4 Hb_001597_020 0.1227143159 - - PREDICTED: uncharacterized protein LOC105629846 isoform X2 [Jatropha curcas]
5 Hb_004635_070 0.1245517821 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Solanum lycopersicum]
6 Hb_002942_140 0.1261775786 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
7 Hb_003175_070 0.1263407748 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
8 Hb_000009_020 0.1270965847 - - ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
9 Hb_050847_040 0.1274871591 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
10 Hb_000454_100 0.1289348254 - - aldo-keto reductase, putative [Ricinus communis]
11 Hb_001953_100 0.1292415443 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
12 Hb_000035_210 0.1360157784 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
13 Hb_001360_030 0.1397937523 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
14 Hb_004837_210 0.1399220008 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
15 Hb_004545_080 0.1418173533 - - protein with unknown function [Ricinus communis]
16 Hb_000792_050 0.1443864201 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_002044_160 0.1449582738 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
18 Hb_007894_190 0.1451903873 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
19 Hb_000056_310 0.1462753233 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
20 Hb_126933_020 0.1470418902 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]

Gene co-expression network

sample Hb_001001_120 Hb_001001_120 Hb_150651_020 Hb_150651_020 Hb_001001_120--Hb_150651_020 Hb_001365_030 Hb_001365_030 Hb_001001_120--Hb_001365_030 Hb_001597_020 Hb_001597_020 Hb_001001_120--Hb_001597_020 Hb_004635_070 Hb_004635_070 Hb_001001_120--Hb_004635_070 Hb_002942_140 Hb_002942_140 Hb_001001_120--Hb_002942_140 Hb_003175_070 Hb_003175_070 Hb_001001_120--Hb_003175_070 Hb_150651_020--Hb_001597_020 Hb_004705_070 Hb_004705_070 Hb_150651_020--Hb_004705_070 Hb_126933_020 Hb_126933_020 Hb_150651_020--Hb_126933_020 Hb_150651_020--Hb_004635_070 Hb_007894_190 Hb_007894_190 Hb_150651_020--Hb_007894_190 Hb_010632_020 Hb_010632_020 Hb_001365_030--Hb_010632_020 Hb_007765_130 Hb_007765_130 Hb_001365_030--Hb_007765_130 Hb_000940_030 Hb_000940_030 Hb_001365_030--Hb_000940_030 Hb_000679_080 Hb_000679_080 Hb_001365_030--Hb_000679_080 Hb_002044_160 Hb_002044_160 Hb_001365_030--Hb_002044_160 Hb_003053_070 Hb_003053_070 Hb_001365_030--Hb_003053_070 Hb_001597_020--Hb_004705_070 Hb_009692_040 Hb_009692_040 Hb_001597_020--Hb_009692_040 Hb_164926_010 Hb_164926_010 Hb_001597_020--Hb_164926_010 Hb_001597_020--Hb_001365_030 Hb_001953_100 Hb_001953_100 Hb_004635_070--Hb_001953_100 Hb_004635_070--Hb_007894_190 Hb_000009_020 Hb_000009_020 Hb_004635_070--Hb_000009_020 Hb_050847_040 Hb_050847_040 Hb_004635_070--Hb_050847_040 Hb_004545_080 Hb_004545_080 Hb_002942_140--Hb_004545_080 Hb_003050_360 Hb_003050_360 Hb_002942_140--Hb_003050_360 Hb_000230_530 Hb_000230_530 Hb_002942_140--Hb_000230_530 Hb_002942_140--Hb_003175_070 Hb_112064_010 Hb_112064_010 Hb_002942_140--Hb_112064_010 Hb_002942_140--Hb_010632_020 Hb_000414_080 Hb_000414_080 Hb_003175_070--Hb_000414_080 Hb_000594_060 Hb_000594_060 Hb_003175_070--Hb_000594_060 Hb_003847_040 Hb_003847_040 Hb_003175_070--Hb_003847_040 Hb_007594_080 Hb_007594_080 Hb_003175_070--Hb_007594_080 Hb_002675_080 Hb_002675_080 Hb_003175_070--Hb_002675_080 Hb_003175_070--Hb_004545_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.21669 2.2501 18.4471 8.67244 2.55257 1.84253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.628191 0.414571 1.63685 6.07822 14.6983

CAGE analysis