Hb_004705_070

Information

Type -
Description -
Location Contig4705: 94327-100224
Sequence    

Annotation

kegg
ID rcu:RCOM_1438150
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012088727.1
description PREDICTED: uncharacterized protein LOC105647312 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JH81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44233: 94459-98496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004705_070 0.0 - - PREDICTED: uncharacterized protein LOC105647312 isoform X1 [Jatropha curcas]
2 Hb_150651_020 0.108721878 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_001597_020 0.1206862113 - - PREDICTED: uncharacterized protein LOC105629846 isoform X2 [Jatropha curcas]
4 Hb_050847_040 0.1388471331 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
5 Hb_126933_020 0.1448693715 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
6 Hb_010683_030 0.1451535333 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003894_060 0.1466277544 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004330_020 0.1466862863 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
9 Hb_002498_300 0.1467595676 - - BnaC04g50140D [Brassica napus]
10 Hb_001689_050 0.1507507624 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
11 Hb_002999_030 0.1557022676 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
12 Hb_003683_030 0.1583631479 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
13 Hb_004447_050 0.1603792278 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
14 Hb_000042_050 0.1681405368 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
15 Hb_001001_120 0.1683568778 - - protein phosphatase, putative [Ricinus communis]
16 Hb_007894_190 0.1683961811 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
17 Hb_000076_250 0.1687288789 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000130_130 0.1699506574 - - hypothetical protein POPTR_0001s40330g [Populus trichocarpa]
19 Hb_173660_010 0.1700628398 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]
20 Hb_005000_010 0.1714607732 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004705_070 Hb_004705_070 Hb_150651_020 Hb_150651_020 Hb_004705_070--Hb_150651_020 Hb_001597_020 Hb_001597_020 Hb_004705_070--Hb_001597_020 Hb_050847_040 Hb_050847_040 Hb_004705_070--Hb_050847_040 Hb_126933_020 Hb_126933_020 Hb_004705_070--Hb_126933_020 Hb_010683_030 Hb_010683_030 Hb_004705_070--Hb_010683_030 Hb_003894_060 Hb_003894_060 Hb_004705_070--Hb_003894_060 Hb_001001_120 Hb_001001_120 Hb_150651_020--Hb_001001_120 Hb_150651_020--Hb_001597_020 Hb_150651_020--Hb_126933_020 Hb_004635_070 Hb_004635_070 Hb_150651_020--Hb_004635_070 Hb_007894_190 Hb_007894_190 Hb_150651_020--Hb_007894_190 Hb_001597_020--Hb_001001_120 Hb_009692_040 Hb_009692_040 Hb_001597_020--Hb_009692_040 Hb_164926_010 Hb_164926_010 Hb_001597_020--Hb_164926_010 Hb_001365_030 Hb_001365_030 Hb_001597_020--Hb_001365_030 Hb_004330_020 Hb_004330_020 Hb_050847_040--Hb_004330_020 Hb_001439_210 Hb_001439_210 Hb_050847_040--Hb_001439_210 Hb_004545_080 Hb_004545_080 Hb_050847_040--Hb_004545_080 Hb_001488_290 Hb_001488_290 Hb_050847_040--Hb_001488_290 Hb_000200_330 Hb_000200_330 Hb_050847_040--Hb_000200_330 Hb_050847_040--Hb_003894_060 Hb_004855_070 Hb_004855_070 Hb_126933_020--Hb_004855_070 Hb_003416_020 Hb_003416_020 Hb_126933_020--Hb_003416_020 Hb_005488_190 Hb_005488_190 Hb_126933_020--Hb_005488_190 Hb_004208_090 Hb_004208_090 Hb_126933_020--Hb_004208_090 Hb_126933_020--Hb_001365_030 Hb_010863_030 Hb_010863_030 Hb_010683_030--Hb_010863_030 Hb_004447_050 Hb_004447_050 Hb_010683_030--Hb_004447_050 Hb_018133_070 Hb_018133_070 Hb_010683_030--Hb_018133_070 Hb_000032_360 Hb_000032_360 Hb_010683_030--Hb_000032_360 Hb_005000_010 Hb_005000_010 Hb_010683_030--Hb_005000_010 Hb_001663_130 Hb_001663_130 Hb_003894_060--Hb_001663_130 Hb_003683_030 Hb_003683_030 Hb_003894_060--Hb_003683_030 Hb_005214_070 Hb_005214_070 Hb_003894_060--Hb_005214_070 Hb_000093_140 Hb_000093_140 Hb_003894_060--Hb_000093_140 Hb_001001_090 Hb_001001_090 Hb_003894_060--Hb_001001_090 Hb_002432_050 Hb_002432_050 Hb_003894_060--Hb_002432_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.07358 1.2651 6.57015 3.73028 1.31365 0.866172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0730553 0.086205 0 0.988409 5.25771

CAGE analysis