Hb_004330_020

Information

Type -
Description -
Location Contig4330: 36190-43554
Sequence    

Annotation

kegg
ID rcu:RCOM_0903600
description hypothetical protein
nr
ID XP_012092360.1
description PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
swissprot
ID Q5XEZ5
description Calcium permeable stress-gated cation channel 1 OS=Arabidopsis thaliana GN=CSC1 PE=2 SV=1
trembl
ID B9RXG3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0903600 PE=4 SV=1
Gene Ontology
ID GO:0016020
description calcium permeable stress-gated cation channel 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42378: 35958-43480 , PASA_asmbl_42381: 37042-37156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004330_020 0.0 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
2 Hb_050847_040 0.1014887731 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
3 Hb_005000_010 0.1091592048 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
4 Hb_002675_080 0.1262377468 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
5 Hb_007765_130 0.1264832263 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
6 Hb_000635_050 0.1294465528 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
7 Hb_000042_050 0.132572872 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
8 Hb_002488_010 0.1355212158 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
9 Hb_004545_080 0.1362575372 - - protein with unknown function [Ricinus communis]
10 Hb_003894_060 0.1379466828 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005724_040 0.1400169868 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
12 Hb_000083_080 0.1402052144 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
13 Hb_000076_250 0.1403000734 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000200_330 0.1406106809 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
15 Hb_093077_010 0.1412668891 transcription factor TF Family: G2-like PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
16 Hb_001001_090 0.1430205309 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
17 Hb_003849_160 0.1442509452 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
18 Hb_000357_070 0.1448786483 - - -
19 Hb_004705_070 0.1466862863 - - PREDICTED: uncharacterized protein LOC105647312 isoform X1 [Jatropha curcas]
20 Hb_000071_160 0.1467431738 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]

Gene co-expression network

sample Hb_004330_020 Hb_004330_020 Hb_050847_040 Hb_050847_040 Hb_004330_020--Hb_050847_040 Hb_005000_010 Hb_005000_010 Hb_004330_020--Hb_005000_010 Hb_002675_080 Hb_002675_080 Hb_004330_020--Hb_002675_080 Hb_007765_130 Hb_007765_130 Hb_004330_020--Hb_007765_130 Hb_000635_050 Hb_000635_050 Hb_004330_020--Hb_000635_050 Hb_000042_050 Hb_000042_050 Hb_004330_020--Hb_000042_050 Hb_001439_210 Hb_001439_210 Hb_050847_040--Hb_001439_210 Hb_004545_080 Hb_004545_080 Hb_050847_040--Hb_004545_080 Hb_001488_290 Hb_001488_290 Hb_050847_040--Hb_001488_290 Hb_000200_330 Hb_000200_330 Hb_050847_040--Hb_000200_330 Hb_003894_060 Hb_003894_060 Hb_050847_040--Hb_003894_060 Hb_000320_310 Hb_000320_310 Hb_005000_010--Hb_000320_310 Hb_000274_050 Hb_000274_050 Hb_005000_010--Hb_000274_050 Hb_004218_200 Hb_004218_200 Hb_005000_010--Hb_004218_200 Hb_010863_030 Hb_010863_030 Hb_005000_010--Hb_010863_030 Hb_002876_200 Hb_002876_200 Hb_005000_010--Hb_002876_200 Hb_002675_080--Hb_000042_050 Hb_000099_170 Hb_000099_170 Hb_002675_080--Hb_000099_170 Hb_003849_160 Hb_003849_160 Hb_002675_080--Hb_003849_160 Hb_003582_090 Hb_003582_090 Hb_002675_080--Hb_003582_090 Hb_003175_070 Hb_003175_070 Hb_002675_080--Hb_003175_070 Hb_002026_030 Hb_002026_030 Hb_002675_080--Hb_002026_030 Hb_007765_130--Hb_000042_050 Hb_003055_070 Hb_003055_070 Hb_007765_130--Hb_003055_070 Hb_001365_030 Hb_001365_030 Hb_007765_130--Hb_001365_030 Hb_000005_100 Hb_000005_100 Hb_007765_130--Hb_000005_100 Hb_000679_080 Hb_000679_080 Hb_007765_130--Hb_000679_080 Hb_000093_140 Hb_000093_140 Hb_007765_130--Hb_000093_140 Hb_000357_070 Hb_000357_070 Hb_000635_050--Hb_000357_070 Hb_004678_010 Hb_004678_010 Hb_000635_050--Hb_004678_010 Hb_017098_040 Hb_017098_040 Hb_000635_050--Hb_017098_040 Hb_000635_050--Hb_002026_030 Hb_000635_050--Hb_007765_130 Hb_000635_050--Hb_003055_070 Hb_001053_020 Hb_001053_020 Hb_000042_050--Hb_001053_020 Hb_000042_050--Hb_000099_170 Hb_000042_050--Hb_003175_070 Hb_000042_050--Hb_003849_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43366 6.80947 19.5145 16.7992 2.43452 3.90014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.394908 0.241704 0.484315 5.0857 15.4688

CAGE analysis